Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_192890.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02038-IBu 0 -0.52 -1.85 -8.62 -8.62
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_192890.1 SmLINC02038-IBu 0.83 9.01e-05 1.30e-03
Smp_192890.1 SmLINC02255-IBu 0.82 1.00e-04 1.70e-03
Smp_192890.1 SmLINC03769-IBu 0.88 1.43e-05 3.00e-04
Smp_192890.1 SmLINC05274-IBu 0.80 2.00e-04 2.80e-03
Smp_192890.1 SmLINC05284-IBu 0.82 1.00e-04 1.90e-03
Smp_192890.1 SmLINC05989-IBu 0.82 1.00e-04 2.10e-03
Smp_192890.1 SmLINC06890-IBu 0.88 1.17e-05 2.00e-04
Smp_192890.1 SmLINC06903-IBu 0.87 2.05e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00093-IBu 0 -1.11 -3.33 -5.06 -7.16
SmLINC00298-IBu 0 -1.03 -2.32 -8.70 -8.70
SmLINC00568-IBu 0 -1.41 -4.15 -10.91 -11.85
SmLINC01234-IBu 0 -1.15 -2.33 -5.84 -5.11
SmLINC01675-IBu 0 -0.80 -1.29 -3.92 -5.49
SmLINC03574-IBu 0 -1.17 -2.16 -3.29 -5.27
Smp_014670.1 0 -1.55 -1.47 -4.90 -6.50
Smp_044550.6 0 -0.95 -1.12 -5.95 -6.31
Smp_046930.1 0 -0.70 -2.23 -5.64 -6.64
Smp_083340.1 0 -1.27 -1.69 -7.43 -6.68
Smp_088610.1 0 -1.02 -3.23 -3.96 -5.44
Smp_097830.1 0 -0.72 -1.42 -3.72 -4.56
Smp_111320.1 0 -0.97 -2.64 -4.04 -5.54
Smp_114220.1 0 -0.84 -2.09 -5.04 -6.34
Smp_141630.1 0 -0.98 -2.37 -8.56 -9.70
Smp_159600.1 0 -1.24 -3.76 -4.15 -5.60
Smp_161000.2 0 -1.02 -2.38 -7.73 -8.46
Smp_165300.1 0 -0.91 -2.66 -11.47 -6.39
Smp_174560.1 0 -1.74 -2.28 -5.34 -5.48
Smp_175890.1 0 -0.96 -2.50 -8.62 -9.58
Smp_177520.1 0 -1.05 -1.72 -9.36 -8.37
Smp_178530.1 0 -1.33 -2.48 -5.11 -6.02
Smp_178620.1 0 -1.14 -2.86 -9.00 -9.00
Smp_178630.1 0 -1.78 -5.50 -9.26 -9.26
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_187350.1 0 -1.35 -2.38 -8.77 -9.63
Smp_188880.1 0 -0.67 -5.57 -9.86 -9.86
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_198950.1 0 -0.98 -2.10 -5.57 -7.76
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_213890.1 0 -1.00 -1.46 -4.08 -4.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_192890.1 SmLINC00093-IBu 0.90 3.36e-06 1.00e-04
Smp_192890.1 SmLINC00298-IBu 0.93 2.62e-07 2.10e-05
Smp_192890.1 SmLINC00568-IBu 0.93 3.18e-07 2.40e-05
Smp_192890.1 SmLINC01234-IBu 0.92 7.93e-07 4.53e-05
Smp_192890.1 SmLINC01675-IBu 0.90 2.81e-06 1.00e-04
Smp_192890.1 SmLINC03574-IBu 0.94 7.22e-08 8.66e-06
Smp_192890.1 Smp_014670.1 0.92 5.30e-07 3.42e-05
Smp_192890.1 Smp_044550.6 0.90 2.81e-06 1.00e-04
Smp_046930.1 Smp_192890.1 0.90 4.05e-06 1.00e-04
Smp_192890.1 Smp_083340.1 0.94 8.91e-08 9.99e-06
Smp_192890.1 Smp_088610.1 0.91 2.36e-06 9.77e-05
Smp_192890.1 Smp_097830.1 0.91 1.34e-06 6.57e-05
Smp_192890.1 Smp_111320.1 0.93 2.28e-07 1.91e-05
Smp_192890.1 Smp_114220.1 0.92 1.00e-06 5.34e-05
Smp_192890.1 Smp_141630.1 0.90 3.67e-06 1.00e-04
Smp_192890.1 Smp_159600.1 0.91 2.47e-06 1.00e-04
Smp_192890.1 Smp_161000.2 0.91 1.67e-06 7.69e-05
Smp_192890.1 Smp_165300.1 0.90 3.63e-06 1.00e-04
Smp_192890.1 Smp_174560.1 0.90 2.96e-06 1.00e-04
Smp_175890.1 Smp_192890.1 0.90 2.64e-06 1.00e-04
Smp_192890.1 Smp_177520.1 0.98 6.91e-12 2.18e-08
Smp_192890.1 Smp_178530.1 0.94 1.66e-07 1.53e-05
Smp_192890.1 Smp_178620.1 0.92 9.46e-07 5.13e-05
Smp_192890.1 Smp_178630.1 0.90 4.05e-06 1.00e-04
Smp_192890.1 Smp_182890.1 0.92 6.15e-07 3.79e-05
Smp_192890.1 Smp_186130.1 0.93 2.99e-07 2.30e-05
Smp_192890.1 Smp_187350.1 0.92 6.07e-07 3.76e-05
Smp_192890.1 Smp_188880.1 0.91 2.00e-06 8.72e-05
Smp_192890.1 Smp_198950.1 0.92 6.56e-07 3.97e-05
Smp_192890.1 Smp_205550.1 0.91 1.23e-06 6.19e-05
Smp_192890.1 Smp_205860.1 0.92 1.11e-06 5.74e-05
Smp_206200.1 Smp_192890.1 0.90 2.79e-06 1.00e-04
Smp_192890.1 Smp_213890.1 0.91 1.82e-06 8.15e-05