Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_192880.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_192880.1 SmLINC02039-IBu 0.81 2.00e-04 2.40e-03
Smp_192880.1 SmLINC02678-IBu 0.84 7.86e-05 1.10e-03
Smp_192880.1 SmLINC02888-IBu 0.83 1.00e-04 1.60e-03
Smp_192880.1 SmLINC06892-IBu 0.97 1.03e-09 4.82e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_192880.1 Smp_009650.2 0.95 1.61e-08 3.15e-06
Smp_192880.1 Smp_036400.2 0.95 4.92e-08 6.68e-06
Smp_192880.1 Smp_066010.1 0.94 1.86e-07 1.65e-05
Smp_192880.1 Smp_085290.3 0.92 5.73e-07 3.61e-05
Smp_192880.1 Smp_106390.1 0.92 5.20e-07 3.37e-05
Smp_192880.1 Smp_133770.1 0.92 9.39e-07 5.10e-05
Smp_192880.1 Smp_150690.2 0.94 1.05e-07 1.11e-05
Smp_192880.1 Smp_153240.1 0.92 1.10e-06 5.71e-05
Smp_192880.1 Smp_178240.1 0.95 5.33e-08 7.05e-06
Smp_192880.1 Smp_184460.1 0.96 2.67e-09 9.61e-07
Smp_192880.1 Smp_185360.1 0.95 2.01e-08 3.65e-06
Smp_192880.1 Smp_206150.1 0.91 1.92e-06 8.47e-05