Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_192300.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04475-IBu 0 -0.34 2.17 4.09 3.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05632-IBu 0 4.56 6.06 7.28 6.53
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06444-IBu 0 -1.92 -0.19 3.94 3.05
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_192300.1 0 -0.54 1.98 4.92 4.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_192300.1 SmLINC00171-IBu 0.80 2.00e-04 2.90e-03
Smp_192300.1 SmLINC00369-IBu 0.84 6.02e-05 9.00e-04
Smp_192300.1 SmLINC00477-IBu 0.87 1.86e-05 4.00e-04
Smp_192300.1 SmLINC00484-IBu 0.89 7.08e-06 2.00e-04
Smp_192300.1 SmLINC00548-IBu 0.81 2.00e-04 2.70e-03
Smp_192300.1 SmLINC00556-IBu -0.80 3.00e-04 3.10e-03
Smp_192300.1 SmLINC00633-IBu 0.83 1.00e-04 1.50e-03
Smp_192300.1 SmLINC01066-IBu 0.83 9.84e-05 1.30e-03
Smp_192300.1 SmLINC01122-IBu 0.82 1.00e-04 1.90e-03
Smp_192300.1 SmLINC01139-IBu 0.81 2.00e-04 2.50e-03
Smp_192300.1 SmLINC01433-IBu 0.86 2.56e-05 5.00e-04
Smp_192300.1 SmLINC01435-IBu 0.87 1.82e-05 4.00e-04
Smp_192300.1 SmLINC01538-IBu 0.83 1.00e-04 1.40e-03
Smp_192300.1 SmLINC01569-IBu 0.84 8.30e-05 1.20e-03
Smp_192300.1 SmLINC01733-IBu 0.80 2.00e-04 2.80e-03
Smp_192300.1 SmLINC01746-IBu 0.86 2.78e-05 5.00e-04
Smp_192300.1 SmLINC01822-IBu 0.84 7.66e-05 1.10e-03
Smp_192300.1 SmLINC02084-IBu 0.81 2.00e-04 2.50e-03
Smp_192300.1 SmLINC02657-IBu -0.82 1.00e-04 2.00e-03
Smp_192300.1 SmLINC03309-IBu 0.86 3.03e-05 5.00e-04
Smp_192300.1 SmLINC03542-IBu 0.87 1.56e-05 3.00e-04
Smp_192300.1 SmLINC03693-IBu 0.87 1.54e-05 3.00e-04
Smp_192300.1 SmLINC04054-IBu 0.80 2.00e-04 3.10e-03
Smp_192300.1 SmLINC04345-IBu 0.80 2.00e-04 2.80e-03
Smp_192300.1 SmLINC04475-IBu 0.87 1.99e-05 4.00e-04
Smp_192300.1 SmLINC04521-IBu 0.85 4.58e-05 8.00e-04
Smp_192300.1 SmLINC04663-IBu 0.82 1.00e-04 1.80e-03
Smp_192300.1 SmLINC04759-IBu 0.81 2.00e-04 2.50e-03
Smp_192300.1 SmLINC04769-IBu 0.85 4.73e-05 8.00e-04
Smp_192300.1 SmLINC05147-IBu 0.85 5.52e-05 9.00e-04
Smp_192300.1 SmLINC05171-IBu 0.82 1.00e-04 2.00e-03
Smp_192300.1 SmLINC05258-IBu 0.82 1.00e-04 1.90e-03
Smp_192300.1 SmLINC05632-IBu 0.80 3.00e-04 3.40e-03
Smp_192300.1 SmLINC06007-IBu 0.82 1.00e-04 2.10e-03
Smp_192300.1 SmLINC06221-IBu 0.90 3.39e-06 1.00e-04
Smp_192300.1 SmLINC06418-IBu 0.82 1.00e-04 1.90e-03
Smp_192300.1 SmLINC06444-IBu 0.82 1.00e-04 2.00e-03
Smp_192300.1 SmLINC06449-IBu 0.87 1.91e-05 4.00e-04
Smp_192300.1 SmLINC06536-IBu 0.81 2.00e-04 2.40e-03
Smp_192300.1 SmLINC06538-IBu 0.81 2.00e-04 2.70e-03
Smp_192300.1 SmLINC06543-IBu 0.90 2.54e-06 9.96e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_051210.3 0 3.15 11.52 13.74 13.72
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_192300.1 0 -0.54 1.98 4.92 4.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_014780.1 Smp_192300.1 0.91 1.38e-06 6.70e-05
Smp_045200.1 Smp_192300.1 0.92 7.85e-07 4.50e-05
Smp_051210.3 Smp_192300.1 0.93 1.97e-07 1.72e-05
Smp_118560.1 Smp_192300.1 0.90 4.35e-06 1.00e-04
Smp_141680.1 Smp_192300.1 0.92 6.88e-07 4.10e-05