Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_192030.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC03395-IBu 0 1.75 0.29 -4.35 -2.74
SmLINC06021-IBu 0 0.49 1.13 -8.68 -8.68
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_192030.1 0 1.02 1.31 -3.21 -4.10

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_192030.1 SmLINC02026-IBu 0.85 5.61e-05 9.00e-04
Smp_192030.1 SmLINC03395-IBu 0.81 2.00e-04 2.50e-03
Smp_192030.1 SmLINC06021-IBu 0.84 7.33e-05 1.10e-03
Smp_192030.1 SmLINC06490-IBu 0.88 1.29e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_109340.1 0 1.47 0.69 -10.22 -10.22
Smp_192030.1 0 1.02 1.31 -3.21 -4.10

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_090930.5 Smp_192030.1 0.90 4.28e-06 1.00e-04
Smp_192030.1 Smp_109340.1 0.91 2.29e-06 9.59e-05