Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_191970.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
Smp_191970.1 0 0.92 1.80 5.11 6.09

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_191970.1 SmLINC00376-IBu 0.81 2.00e-04 1.80e-03
Smp_191970.1 SmLINC01431-IBu 0.90 2.87e-06 7.88e-05
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_191970.1 0 0.92 1.80 5.11 6.09

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_191970.1 SmLINC00001-IBu 0.92 1.00e-06 5.16e-05
Smp_191970.1 SmLINC00004-IBu 0.91 1.74e-06 7.63e-05
Smp_191970.1 SmLINC00294-IBu -0.80 2.00e-04 3.10e-03
Smp_191970.1 SmLINC00369-IBu 0.87 2.13e-05 4.00e-04
Smp_191970.1 SmLINC00376-IBu 0.81 2.00e-04 2.30e-03
Smp_191970.1 SmLINC00525-IBu 0.80 2.00e-04 2.70e-03
Smp_191970.1 SmLINC01084-IBu 0.86 3.04e-05 5.00e-04
Smp_191970.1 SmLINC01431-IBu 0.90 2.87e-06 1.00e-04
Smp_191970.1 SmLINC01733-IBu 0.85 5.53e-05 9.00e-04
Smp_191970.1 SmLINC02084-IBu 0.86 3.12e-05 6.00e-04
Smp_191970.1 SmLINC02255-IBu -0.88 1.39e-05 3.00e-04
Smp_191970.1 SmLINC02376-IBu 0.85 4.75e-05 8.00e-04
Smp_191970.1 SmLINC02394-IBu 0.88 1.04e-05 2.00e-04
Smp_191970.1 SmLINC02539-IBu 0.81 1.00e-04 2.30e-03
Smp_191970.1 SmLINC02546-IBu 0.84 6.20e-05 9.00e-04
Smp_191970.1 SmLINC02577-IBu 0.80 3.00e-04 3.20e-03
Smp_191970.1 SmLINC02630-IBu -0.87 2.04e-05 4.00e-04
Smp_191970.1 SmLINC02657-IBu -0.83 1.00e-04 1.40e-03
Smp_191970.1 SmLINC03326-IBu 0.87 2.38e-05 4.00e-04
Smp_191970.1 SmLINC03849-IBu -0.83 1.00e-04 1.40e-03
Smp_191970.1 SmLINC04235-IBu 0.82 1.00e-04 1.90e-03
Smp_191970.1 SmLINC04421-IBu 0.86 2.61e-05 5.00e-04
Smp_191970.1 SmLINC04423-IBu 0.85 3.99e-05 7.00e-04
Smp_191970.1 SmLINC04521-IBu 0.81 1.00e-04 2.10e-03
Smp_191970.1 SmLINC05147-IBu 0.83 1.00e-04 1.60e-03
Smp_191970.1 SmLINC05274-IBu -0.82 1.00e-04 1.80e-03
Smp_191970.1 SmLINC05284-IBu -0.83 1.00e-04 1.60e-03
Smp_191970.1 SmLINC05289-IBu 0.84 6.42e-05 1.00e-03
Smp_191970.1 SmLINC05604-IBu 0.84 7.42e-05 1.10e-03
Smp_191970.1 SmLINC06024-IBu 0.85 4.20e-05 7.00e-04
Smp_191970.1 SmLINC06145-IBu 0.84 8.74e-05 1.20e-03
Smp_191970.1 SmLINC06535-IBu -0.85 5.09e-05 8.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_191970.1 0 0.92 1.80 5.11 6.09
Smp_192780.1 0 1.26 4.06 9.03 10.25

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_191970.1 Smp_024180.1 0.93 1.95e-07 1.71e-05
Smp_024180.2 Smp_191970.1 0.95 3.87e-08 5.68e-06
Smp_033260.1 Smp_191970.1 0.92 1.07e-06 5.60e-05
Smp_038870.2 Smp_191970.1 0.91 2.23e-06 9.39e-05
Smp_050350.3 Smp_191970.1 0.93 3.57e-07 2.60e-05
Smp_191970.1 Smp_052280.2 0.93 4.02e-07 2.82e-05
Smp_191970.1 Smp_079420.1 0.91 1.24e-06 6.23e-05
Smp_094050.1 Smp_191970.1 0.91 1.47e-06 7.02e-05
Smp_191970.1 Smp_137000.2 0.90 3.25e-06 1.00e-04
Smp_155570.1 Smp_191970.1 0.90 4.63e-06 1.00e-04
Smp_169670.1 Smp_191970.1 0.91 2.31e-06 9.63e-05
Smp_191970.1 Smp_192780.1 0.90 3.18e-06 1.00e-04