Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_190940.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_190940.1 0 -3.61 -6.81 -3.30 -6.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_190940.1 SmLINC06892-IBu 0.84 6.15e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_190940.1 0 -3.61 -6.81 -3.30 -6.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_190940.1 Smp_066010.1 0.92 8.35e-07 4.70e-05
Smp_190940.1 Smp_085290.3 0.90 2.78e-06 1.00e-04
Smp_190940.1 Smp_116760.1 0.90 3.98e-06 1.00e-04