Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_190900.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC01979-IBu 0 1.86 0.63 -5.36 -5.36
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
Smp_190900.1 0 0.50 -0.24 -3.60 -3.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_190900.1 SmLINC00372-IBu 0.80 3.00e-04 3.40e-03
Smp_190900.1 SmLINC01316-IBu 0.87 2.47e-05 5.00e-04
Smp_190900.1 SmLINC01979-IBu 0.88 1.48e-05 3.00e-04
Smp_190900.1 SmLINC02646-IBu 0.97 2.15e-10 1.74e-07
Smp_190900.1 SmLINC04074-IBu 0.80 3.00e-04 3.40e-03
Smp_190900.1 SmLINC06646-IBu 0.92 7.62e-07 4.23e-05
Smp_190900.1 SmLINC06700-IBu 0.87 1.62e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_040970.3 0 11.70 13.01 5.20 8.78
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_190900.1 0 0.50 -0.24 -3.60 -3.79
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_017650.1 Smp_190900.1 0.91 1.90e-06 8.40e-05
Smp_040970.3 Smp_190900.1 0.92 9.15e-07 5.01e-05
Smp_059340.3 Smp_190900.1 0.92 8.30e-07 4.68e-05
Smp_062610.2 Smp_190900.1 0.92 5.95e-07 3.71e-05
Smp_168800.1 Smp_190900.1 0.92 5.23e-07 3.39e-05
Smp_200120.1 Smp_190900.1 0.90 4.48e-06 1.00e-04