Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_190590.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_190590.1 0 -2.59 -2.98 -7.31 -8.64

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_190590.1 SmLINC06892-IBu 0.97 2.64e-10 1.99e-07
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_190590.1 0 -2.59 -2.98 -7.31 -8.64

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009650.2 Smp_190590.1 0.95 1.58e-08 3.10e-06
Smp_036400.2 Smp_190590.1 0.96 1.33e-08 2.77e-06
Smp_066010.1 Smp_190590.1 0.92 7.43e-07 4.33e-05
Smp_150690.2 Smp_190590.1 0.91 1.47e-06 7.01e-05
Smp_178240.1 Smp_190590.1 0.91 1.54e-06 7.25e-05
Smp_184460.1 Smp_190590.1 0.94 7.59e-08 8.97e-06
Smp_185360.1 Smp_190590.1 0.91 1.29e-06 6.41e-05