Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_190390.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_190390.1 0 -1.86 -3.88 -4.81 -6.59

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_190390.1 SmLINC06892-IBu 0.92 5.88e-07 3.52e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_033000.1 0 -1.72 -11.37 -13.15 -11.62
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_190390.1 0 -1.86 -3.88 -4.81 -6.59

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_033000.1 Smp_190390.1 0.94 1.40e-07 1.36e-05
Smp_036400.2 Smp_190390.1 0.95 2.22e-08 3.89e-06
Smp_106390.1 Smp_190390.1 0.91 1.27e-06 6.33e-05
Smp_145810.2 Smp_190390.1 0.90 3.34e-06 1.00e-04
Smp_150690.2 Smp_190390.1 0.95 2.74e-08 4.49e-06
Smp_165180.1 Smp_190390.1 0.97 3.14e-10 2.43e-07
Smp_190390.1 Smp_184460.1 0.90 3.81e-06 1.00e-04