Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_190320.1 Data

Correlation between Smp_190320.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_190320.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_190320.1 SmLINC02888-IBu 0.80 2.00e-04 3.00e-03
Smp_190320.1 SmLINC06892-IBu 0.95 5.73e-08 7.00e-06

Correlation between Smp_190320.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_190320.1 Smp_009650.2 0.92 1.17e-06 5.98e-05
Smp_190320.1 Smp_032990.1 0.95 1.60e-08 3.12e-06
Smp_190320.1 Smp_066010.1 0.96 2.55e-09 9.31e-07
Smp_190320.1 Smp_085290.3 0.92 5.88e-07 3.68e-05
Smp_190320.1 Smp_116760.1 0.90 4.50e-06 1.00e-04
Smp_190320.1 Smp_133770.1 0.90 3.13e-06 1.00e-04
Smp_190320.1 Smp_178240.1 0.90 2.98e-06 1.00e-04
Smp_183020.1 Smp_190320.1 0.93 1.96e-07 1.71e-05
Smp_190320.1 Smp_183020.6 0.93 1.96e-07 1.71e-05
Smp_190320.1 Smp_184460.1 0.96 1.36e-08 2.80e-06
Smp_190320.1 Smp_185360.1 0.94 1.78e-07 1.61e-05
Smp_190320.1 Smp_202140.1 0.91 2.12e-06 9.08e-05
Smp_190320.1 Smp_206150.1 0.96 6.94e-09 1.79e-06