Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_189960.1 Data

Correlation between Smp_189960.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_189960.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00266-IBu 0 2.25 3.99 6.14 6.95
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_189960.1 0 -1.05 -1.90 -3.92 -4.65

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_189960.1 SmLINC00001-IBu -0.92 6.04e-07 3.59e-05
Smp_189960.1 SmLINC00004-IBu -0.94 1.71e-07 1.49e-05
Smp_189960.1 SmLINC00266-IBu -0.84 8.84e-05 1.20e-03
Smp_189960.1 SmLINC00369-IBu -0.92 7.72e-07 4.27e-05
Smp_189960.1 SmLINC00376-IBu -0.83 9.19e-05 1.30e-03
Smp_189960.1 SmLINC00525-IBu -0.91 2.05e-06 8.55e-05
Smp_189960.1 SmLINC00548-IBu -0.82 1.00e-04 1.70e-03
Smp_189960.1 SmLINC00556-IBu 0.83 9.67e-05 1.30e-03
Smp_189960.1 SmLINC00633-IBu -0.86 3.42e-05 6.00e-04
Smp_189960.1 SmLINC01084-IBu -0.94 6.92e-08 7.96e-06
Smp_189960.1 SmLINC01122-IBu -0.87 1.96e-05 4.00e-04
Smp_189960.1 SmLINC01431-IBu -0.95 5.33e-08 6.66e-06
Smp_189960.1 SmLINC01432-IBu -0.88 1.22e-05 3.00e-04
Smp_189960.1 SmLINC01520-IBu -0.82 1.00e-04 2.10e-03
Smp_189960.1 SmLINC01538-IBu -0.83 1.00e-04 1.40e-03
Smp_189960.1 SmLINC01569-IBu -0.86 2.77e-05 5.00e-04
Smp_189960.1 SmLINC01733-IBu -0.85 4.05e-05 7.00e-04
Smp_189960.1 SmLINC01746-IBu -0.81 1.00e-04 2.30e-03
Smp_189960.1 SmLINC02084-IBu -0.92 7.19e-07 4.06e-05
Smp_189960.1 SmLINC02255-IBu 0.87 1.85e-05 4.00e-04
Smp_189960.1 SmLINC02376-IBu -0.81 2.00e-04 2.40e-03
Smp_189960.1 SmLINC02394-IBu -0.90 4.00e-06 1.00e-04
Smp_189960.1 SmLINC02539-IBu -0.87 2.04e-05 4.00e-04
Smp_189960.1 SmLINC02540-IBu -0.82 1.00e-04 1.90e-03
Smp_189960.1 SmLINC02545-IBu -0.83 9.03e-05 1.30e-03
Smp_189960.1 SmLINC02546-IBu -0.88 1.31e-05 3.00e-04
Smp_189960.1 SmLINC02577-IBu -0.83 1.00e-04 1.40e-03
Smp_189960.1 SmLINC02630-IBu 0.86 3.10e-05 6.00e-04
Smp_189960.1 SmLINC02657-IBu 0.84 7.01e-05 1.00e-03
Smp_189960.1 SmLINC03108-IBu -0.82 1.00e-04 2.00e-03
Smp_189960.1 SmLINC03309-IBu -0.81 2.00e-04 2.40e-03
Smp_189960.1 SmLINC03326-IBu -0.83 1.00e-04 1.60e-03
Smp_189960.1 SmLINC03693-IBu -0.82 1.00e-04 2.10e-03
Smp_189960.1 SmLINC03849-IBu 0.87 1.84e-05 4.00e-04
Smp_189960.1 SmLINC03927-IBu -0.89 7.13e-06 2.00e-04
Smp_189960.1 SmLINC04235-IBu -0.82 1.00e-04 1.70e-03
Smp_189960.1 SmLINC04421-IBu -0.95 5.50e-08 6.81e-06
Smp_189960.1 SmLINC04423-IBu -0.91 1.72e-06 7.55e-05
Smp_189960.1 SmLINC04478-IBu -0.87 1.84e-05 4.00e-04
Smp_189960.1 SmLINC04521-IBu -0.88 1.32e-05 3.00e-04
Smp_189960.1 SmLINC04684-IBu -0.81 2.00e-04 2.60e-03
Smp_189960.1 SmLINC05147-IBu -0.87 2.06e-05 4.00e-04
Smp_189960.1 SmLINC05258-IBu -0.81 2.00e-04 2.40e-03
Smp_189960.1 SmLINC05274-IBu 0.86 2.73e-05 5.00e-04
Smp_189960.1 SmLINC05284-IBu 0.82 1.00e-04 1.80e-03
Smp_189960.1 SmLINC05289-IBu -0.91 1.40e-06 6.51e-05
Smp_189960.1 SmLINC05604-IBu -0.92 5.79e-07 3.49e-05
Smp_189960.1 SmLINC06024-IBu -0.92 7.70e-07 4.26e-05
Smp_189960.1 SmLINC06145-IBu -0.86 3.38e-05 6.00e-04
Smp_189960.1 SmLINC06221-IBu -0.80 3.00e-04 3.20e-03
Smp_189960.1 SmLINC06415-IBu -0.81 1.00e-04 2.20e-03
Smp_189960.1 SmLINC06535-IBu 0.84 8.56e-05 1.20e-03
Smp_189960.1 SmLINC06543-IBu -0.80 2.00e-04 2.80e-03

Correlation between Smp_189960.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_169670.1 0 0.00 8.19 10.09 10.85
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_189960.1 0 -1.05 -1.90 -3.92 -4.65
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203090.1 0 0.00 0.00 10.35 10.67

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_189960.1 Smp_015850.2 0.90 2.78e-06 1.00e-04
Smp_189960.1 Smp_024180.1 -0.91 1.50e-06 7.11e-05
Smp_189960.1 Smp_024180.2 -0.94 1.11e-07 1.16e-05
Smp_189960.1 Smp_033260.1 -0.97 1.17e-09 5.65e-07
Smp_038870.2 Smp_189960.1 -0.92 5.68e-07 3.59e-05
Smp_189960.1 Smp_040970.2 -0.93 2.51e-07 2.03e-05
Smp_189960.1 Smp_050350.3 -0.97 4.88e-10 3.21e-07
Smp_189960.1 Smp_052280.2 -0.96 7.79e-09 1.93e-06
Smp_189960.1 Smp_055340.2 -0.92 1.13e-06 5.83e-05
Smp_189960.1 Smp_056460.1 -0.96 5.79e-09 1.59e-06
Smp_189960.1 Smp_079420.1 -0.96 1.41e-08 2.87e-06
Smp_189960.1 Smp_094050.1 -0.95 3.22e-08 5.01e-06
Smp_189960.1 Smp_095410.1 -0.92 6.73e-07 4.04e-05
Smp_189960.1 Smp_137000.2 -0.94 1.17e-07 1.20e-05
Smp_189960.1 Smp_137810.1 -0.90 3.34e-06 1.00e-04
Smp_189960.1 Smp_145400.1 -0.90 2.86e-06 1.00e-04
Smp_189960.1 Smp_155570.1 -0.92 7.13e-07 4.21e-05
Smp_189960.1 Smp_156930.1 -0.94 1.21e-07 1.23e-05
Smp_189960.1 Smp_169670.1 -0.95 1.76e-08 3.33e-06
Smp_189960.1 Smp_172960.1 -0.93 3.65e-07 2.64e-05
Smp_189960.1 Smp_192780.1 -0.95 5.42e-08 7.14e-06
Smp_194860.1 Smp_189960.1 -0.95 2.33e-08 4.03e-06
Smp_189960.1 Smp_202610.1 -0.90 2.87e-06 1.00e-04
Smp_189960.1 Smp_203090.1 -0.92 8.49e-07 4.75e-05