Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_189180.2 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04074-IBu 0 7.29 6.66 0.00 0.00
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_189180.2 0 -0.25 -0.54 -4.07 -4.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_189180.2 SmLINC00372-IBu 0.91 1.54e-06 7.00e-05
Smp_189180.2 SmLINC01316-IBu 0.94 6.22e-08 7.40e-06
Smp_189180.2 SmLINC02646-IBu 0.92 1.04e-06 5.28e-05
Smp_189180.2 SmLINC04074-IBu 0.83 9.88e-05 1.40e-03
Smp_189180.2 SmLINC05559-IBu 0.80 3.00e-04 3.10e-03
Smp_189180.2 SmLINC06490-IBu 0.90 3.61e-06 1.00e-04
Smp_189180.2 SmLINC06646-IBu 0.91 1.25e-06 6.03e-05
Smp_189180.2 SmLINC06700-IBu 0.86 3.07e-05 5.00e-04
Smp_189180.2 SmLINC06836-IBu 0.86 2.48e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_189180.2 0 -0.25 -0.54 -4.07 -4.89
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_189180.2 Smp_017650.1 0.90 3.72e-06 1.00e-04
Smp_189180.2 Smp_032120.1 0.92 5.59e-07 3.55e-05
Smp_189180.2 Smp_036270.3 0.94 1.42e-07 1.37e-05
Smp_189180.2 Smp_059340.3 0.97 1.62e-09 6.96e-07
Smp_062610.2 Smp_189180.2 0.93 2.14e-07 1.82e-05
Smp_103540.1 Smp_189180.2 0.90 4.15e-06 1.00e-04
Smp_189180.2 Smp_159070.3 0.91 1.76e-06 7.96e-05
Smp_189180.2 Smp_168800.1 0.98 1.40e-11 3.40e-08
Smp_200120.1 Smp_189180.2 0.96 6.03e-09 1.63e-06