Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_188900.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_188900.1 SmLINC02255-IBu 0.86 2.72e-05 5.00e-04
Smp_188900.1 SmLINC02630-IBu 0.86 2.66e-05 5.00e-04
Smp_188900.1 SmLINC02657-IBu 0.82 1.00e-04 1.70e-03
Smp_188900.1 SmLINC03848-IBu 0.80 2.00e-04 2.80e-03
Smp_188900.1 SmLINC05989-IBu 0.86 3.60e-05 6.00e-04
Smp_188900.1 SmLINC05990-IBu -0.80 3.00e-04 3.20e-03
Smp_188900.1 SmLINC06128-IBu 0.89 7.92e-06 2.00e-04
Smp_188900.1 SmLINC06535-IBu 0.88 1.22e-05 3.00e-04
Smp_188900.1 SmLINC06892-IBu 0.84 6.04e-05 9.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00565-IBu 0 -1.33 -5.82 -10.51 -4.87
SmLINC00998-IBu 0 -1.77 -2.82 -9.23 -9.23
SmLINC02455-IBu 0 -0.81 -2.44 -4.53 -4.60
SmLINC04214-IBu 0 -0.71 -1.81 -4.24 -4.23
SmLINC04450-IBu 0 -0.63 -2.31 -4.52 -5.41
SmLINC04598-IBu 0 -0.68 -2.61 -7.38 -7.35
SmLINC04606-IBu 0 -0.48 -2.83 -5.66 -8.00
SmLINC04864-IBu 0 -1.31 -6.10 -2.71 -3.51
SmLINC06111-IBu 0 -0.47 -2.79 -12.47 -8.65
SmLINC06240-IBu 0 -1.33 -10.34 -6.03 -6.09
SmLINC06405-IBu 0 -1.11 -2.49 -5.22 -6.11
Smp_004230.1 0 -1.29 -9.36 -9.36 -9.36
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_026450.1 0 -1.24 -2.94 -5.88 -5.90
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_051230.3 0 -1.49 -4.66 -6.27 -4.15
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_100600.1 0 -0.51 -2.27 -6.43 -6.43
Smp_100790.1 0 -1.29 -9.36 -9.36 -9.36
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_114740.1 0 -1.29 -9.36 -9.36 -9.36
Smp_119050.1 0 -1.30 -4.96 -4.14 -6.99
Smp_124150.1 0 -1.14 -4.97 -8.99 -7.14
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150450.1 0 -0.77 -4.60 -4.36 -4.30
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_157390.1 0 3.34 4.15 5.22 5.62
Smp_157450.1 0 -1.07 -2.97 -4.27 -4.05
Smp_159900.1 0 -1.03 -2.21 -4.34 -4.82
Smp_162370.1 0 -1.45 -4.56 -9.04 -5.93
Smp_165180.1 0 -1.47 -9.43 -12.79 -7.00
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_174520.1 0 -1.49 -5.54 -1.86 -3.92
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_185370.1 0 -0.81 -2.32 -9.88 -9.93
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195060.1 0 -0.69 -4.00 -2.76 -3.57
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_195110.1 0 -0.78 -1.68 -8.24 -8.43
Smp_195150.1 0 -0.70 -1.90 -6.54 -7.80
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_201900.1 0 -0.73 -2.99 -4.99 -3.71
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47
Smp_212290.1 0 -0.97 -5.67 -5.14 -6.52

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_188900.1 SmLINC00565-IBu 0.94 7.25e-08 8.69e-06
Smp_188900.1 SmLINC00998-IBu 0.90 3.74e-06 1.00e-04
Smp_188900.1 SmLINC02455-IBu 0.96 5.95e-09 1.62e-06
Smp_188900.1 SmLINC04214-IBu 0.91 1.44e-06 6.91e-05
Smp_188900.1 SmLINC04450-IBu 0.90 3.14e-06 1.00e-04
Smp_188900.1 SmLINC04598-IBu 0.91 1.47e-06 7.01e-05
Smp_188900.1 SmLINC04606-IBu 0.91 2.15e-06 9.16e-05
Smp_188900.1 SmLINC04864-IBu 0.94 1.16e-07 1.20e-05
Smp_188900.1 SmLINC06111-IBu 0.90 2.95e-06 1.00e-04
Smp_188900.1 SmLINC06240-IBu 0.92 7.25e-07 4.25e-05
Smp_188900.1 SmLINC06405-IBu 0.91 2.35e-06 9.75e-05
Smp_004230.1 Smp_188900.1 0.96 1.44e-08 2.91e-06
Smp_188900.1 Smp_005860.1 0.96 2.62e-09 9.47e-07
Smp_188900.1 Smp_005860.3 0.92 6.68e-07 4.02e-05
Smp_188900.1 Smp_026450.1 0.90 3.58e-06 1.00e-04
Smp_188900.1 Smp_028990.2 0.90 3.90e-06 1.00e-04
Smp_188900.1 Smp_033610.1 0.94 9.95e-08 1.07e-05
Smp_188900.1 Smp_051230.3 0.94 1.10e-07 1.15e-05
Smp_188900.1 Smp_051230.4 0.92 1.01e-06 5.39e-05
Smp_188900.1 Smp_061580.1 0.94 7.45e-08 8.85e-06
Smp_188900.1 Smp_067980.1 0.94 6.48e-08 8.05e-06
Smp_188900.1 Smp_074570.1 0.91 1.28e-06 6.35e-05
Smp_077690.1 Smp_188900.1 0.92 1.08e-06 5.65e-05
Smp_083180.1 Smp_188900.1 0.91 1.72e-06 7.85e-05
Smp_188900.1 Smp_085290.3 0.91 1.47e-06 7.01e-05
Smp_097750.1 Smp_188900.1 0.97 1.81e-09 7.45e-07
Smp_188900.1 Smp_100600.1 0.90 4.82e-06 1.00e-04
Smp_100790.1 Smp_188900.1 0.96 1.44e-08 2.91e-06
Smp_106390.1 Smp_188900.1 0.93 3.00e-07 2.30e-05
Smp_188900.1 Smp_108050.1 0.94 1.77e-07 1.60e-05
Smp_110400.3 Smp_188900.1 0.96 6.72e-09 1.75e-06
Smp_188900.1 Smp_113760.1 0.94 8.67e-08 9.81e-06
Smp_114740.1 Smp_188900.1 0.96 1.44e-08 2.91e-06
Smp_188900.1 Smp_119050.1 0.96 8.08e-09 1.98e-06
Smp_188900.1 Smp_124150.1 0.92 7.02e-07 4.16e-05
Smp_133310.1 Smp_188900.1 0.90 3.32e-06 1.00e-04
Smp_188900.1 Smp_140680.2 0.92 5.46e-07 3.49e-05
Smp_145710.1 Smp_188900.1 0.93 2.89e-07 2.24e-05
Smp_188900.1 Smp_145810.2 0.95 2.39e-08 4.09e-06
Smp_149670.1 Smp_188900.1 0.92 1.16e-06 5.93e-05
Smp_188900.1 Smp_150450.1 0.93 2.24e-07 1.88e-05
Smp_150690.2 Smp_188900.1 0.92 6.55e-07 3.96e-05
Smp_188900.1 Smp_154020.1 0.90 4.27e-06 1.00e-04
Smp_188900.1 Smp_157390.1 -0.90 4.62e-06 1.00e-04
Smp_188900.1 Smp_157450.1 0.93 4.16e-07 2.89e-05
Smp_188900.1 Smp_159900.1 0.95 4.98e-08 6.74e-06
Smp_188900.1 Smp_162370.1 0.93 2.86e-07 2.23e-05
Smp_188900.1 Smp_165180.1 0.91 1.42e-06 6.85e-05
Smp_188900.1 Smp_167350.1 0.91 1.23e-06 6.19e-05
Smp_188900.1 Smp_168080.2 0.95 1.59e-08 3.11e-06
Smp_174520.1 Smp_188900.1 0.90 4.52e-06 1.00e-04
Smp_188900.1 Smp_182770.1 0.98 5.98e-12 2.00e-08
Smp_188900.1 Smp_184460.1 0.92 9.25e-07 5.05e-05
Smp_185180.1 Smp_188900.1 0.94 9.95e-08 1.07e-05
Smp_185220.1 Smp_188900.1 0.95 3.32e-08 5.12e-06
Smp_188900.1 Smp_185360.1 0.92 1.08e-06 5.63e-05
Smp_188900.1 Smp_185370.1 0.94 8.30e-08 9.53e-06
Smp_195060.1 Smp_188900.1 0.91 2.03e-06 8.81e-05
Smp_188900.1 Smp_195070.1 0.97 1.81e-09 7.47e-07
Smp_188900.1 Smp_195110.1 0.91 2.01e-06 8.73e-05
Smp_195150.1 Smp_188900.1 0.90 2.71e-06 1.00e-04
Smp_188900.1 Smp_195160.1 0.90 3.95e-06 1.00e-04
Smp_188900.1 Smp_201900.1 0.91 1.28e-06 6.38e-05
Smp_188900.1 Smp_202140.1 0.94 9.23e-08 1.02e-05
Smp_206150.1 Smp_188900.1 0.90 2.81e-06 1.00e-04
Smp_188900.1 Smp_212290.1 0.92 9.07e-07 4.98e-05