Schistosoma mansoni lncRNAs Database
This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, VinÃcius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.
Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.
Smp_188900.1 Data
Expression Fold Change Data [log2(FC)] - Download data
Pearson Correlation Coefficient Data - Download data
Expression Fold Change Data [log2(FC)] - Download data
| Gene ID | Cerc | 3S | 24S | Male | Female |
|---|---|---|---|---|---|
| SmLINC02255-IBu | 0 | -0.86 | -1.80 | -3.72 | -4.71 |
| SmLINC02630-IBu | 0 | -0.86 | -1.66 | -4.03 | -11.09 |
| SmLINC02657-IBu | 0 | -0.90 | -1.95 | -11.76 | -11.76 |
| SmLINC03848-IBu | 0 | -0.05 | -2.68 | -3.98 | -4.70 |
| SmLINC05989-IBu | 0 | -1.59 | -3.64 | -6.05 | -6.59 |
| SmLINC05990-IBu | 0 | 9.67 | 10.42 | 11.79 | 11.49 |
| SmLINC06128-IBu | 0 | -1.91 | -4.82 | -10.42 | -10.44 |
| SmLINC06535-IBu | 0 | -0.47 | -1.74 | -4.21 | -5.43 |
| SmLINC06892-IBu | 0 | -2.10 | -3.44 | -12.52 | -12.52 |
| Smp_188900.1 | 0 | -1.35 | -4.02 | -11.76 | -11.76 |
Pearson Correlation Coefficient Data - Download data
| Compared Gene | Gene | Pearson Correlation Value | p-value | B.-H. adjusted p-value |
|---|---|---|---|---|
| Smp_188900.1 | SmLINC02255-IBu | 0.86 | 2.72e-05 | 5.00e-04 |
| Smp_188900.1 | SmLINC02630-IBu | 0.86 | 2.66e-05 | 5.00e-04 |
| Smp_188900.1 | SmLINC02657-IBu | 0.82 | 1.00e-04 | 1.70e-03 |
| Smp_188900.1 | SmLINC03848-IBu | 0.80 | 2.00e-04 | 2.80e-03 |
| Smp_188900.1 | SmLINC05989-IBu | 0.86 | 3.60e-05 | 6.00e-04 |
| Smp_188900.1 | SmLINC05990-IBu | -0.80 | 3.00e-04 | 3.20e-03 |
| Smp_188900.1 | SmLINC06128-IBu | 0.89 | 7.92e-06 | 2.00e-04 |
| Smp_188900.1 | SmLINC06535-IBu | 0.88 | 1.22e-05 | 3.00e-04 |
| Smp_188900.1 | SmLINC06892-IBu | 0.84 | 6.04e-05 | 9.00e-04 |
Expression Fold Change Data [log2(FC)] - Download data
| Gene ID | Cerc | 3S | 24S | Male | Female |
|---|---|---|---|---|---|
| SmLINC00565-IBu | 0 | -1.33 | -5.82 | -10.51 | -4.87 |
| SmLINC00998-IBu | 0 | -1.77 | -2.82 | -9.23 | -9.23 |
| SmLINC02455-IBu | 0 | -0.81 | -2.44 | -4.53 | -4.60 |
| SmLINC04214-IBu | 0 | -0.71 | -1.81 | -4.24 | -4.23 |
| SmLINC04450-IBu | 0 | -0.63 | -2.31 | -4.52 | -5.41 |
| SmLINC04598-IBu | 0 | -0.68 | -2.61 | -7.38 | -7.35 |
| SmLINC04606-IBu | 0 | -0.48 | -2.83 | -5.66 | -8.00 |
| SmLINC04864-IBu | 0 | -1.31 | -6.10 | -2.71 | -3.51 |
| SmLINC06111-IBu | 0 | -0.47 | -2.79 | -12.47 | -8.65 |
| SmLINC06240-IBu | 0 | -1.33 | -10.34 | -6.03 | -6.09 |
| SmLINC06405-IBu | 0 | -1.11 | -2.49 | -5.22 | -6.11 |
| Smp_004230.1 | 0 | -1.29 | -9.36 | -9.36 | -9.36 |
| Smp_005860.1 | 0 | -1.88 | -5.14 | -8.12 | -7.71 |
| Smp_005860.3 | 0 | -2.06 | -4.24 | -7.23 | -8.92 |
| Smp_026450.1 | 0 | -1.24 | -2.94 | -5.88 | -5.90 |
| Smp_028990.2 | 0 | -2.03 | -4.85 | -4.73 | -6.76 |
| Smp_033610.1 | 0 | -2.04 | -4.32 | -5.07 | -4.63 |
| Smp_051230.3 | 0 | -1.49 | -4.66 | -6.27 | -4.15 |
| Smp_051230.4 | 0 | -1.10 | -5.26 | -12.47 | -12.47 |
| Smp_061580.1 | 0 | -1.55 | -4.87 | -3.14 | -2.48 |
| Smp_067980.1 | 0 | -0.94 | -11.67 | -4.00 | -4.18 |
| Smp_074570.1 | 0 | -1.85 | -4.23 | -8.15 | -8.27 |
| Smp_077690.1 | 0 | -0.88 | -2.98 | -12.11 | -12.11 |
| Smp_083180.1 | 0 | -1.30 | -10.31 | -10.31 | -10.31 |
| Smp_085290.3 | 0 | -2.11 | -9.33 | -13.07 | -9.78 |
| Smp_097750.1 | 0 | -1.63 | -3.99 | -4.48 | -3.56 |
| Smp_100600.1 | 0 | -0.51 | -2.27 | -6.43 | -6.43 |
| Smp_100790.1 | 0 | -1.29 | -9.36 | -9.36 | -9.36 |
| Smp_106390.1 | 0 | -2.35 | -4.90 | -10.78 | -6.23 |
| Smp_108050.1 | 0 | -2.06 | -3.07 | -8.81 | -9.10 |
| Smp_110400.3 | 0 | -1.47 | -2.30 | -8.95 | -9.88 |
| Smp_113760.1 | 0 | -1.77 | -5.35 | -7.90 | -7.26 |
| Smp_114740.1 | 0 | -1.29 | -9.36 | -9.36 | -9.36 |
| Smp_119050.1 | 0 | -1.30 | -4.96 | -4.14 | -6.99 |
| Smp_124150.1 | 0 | -1.14 | -4.97 | -8.99 | -7.14 |
| Smp_133310.1 | 0 | -1.74 | -4.20 | -4.35 | -4.73 |
| Smp_140680.2 | 0 | -1.06 | -11.75 | -8.40 | -8.18 |
| Smp_145710.1 | 0 | -1.79 | -2.79 | -7.90 | -7.78 |
| Smp_145810.2 | 0 | -1.83 | -3.47 | -4.75 | -10.08 |
| Smp_149670.1 | 0 | -1.98 | -3.69 | -10.45 | -9.35 |
| Smp_150450.1 | 0 | -0.77 | -4.60 | -4.36 | -4.30 |
| Smp_150690.2 | 0 | -2.07 | -12.58 | -12.58 | -12.58 |
| Smp_154020.1 | 0 | -1.89 | -2.51 | -3.88 | -5.45 |
| Smp_157390.1 | 0 | 3.34 | 4.15 | 5.22 | 5.62 |
| Smp_157450.1 | 0 | -1.07 | -2.97 | -4.27 | -4.05 |
| Smp_159900.1 | 0 | -1.03 | -2.21 | -4.34 | -4.82 |
| Smp_162370.1 | 0 | -1.45 | -4.56 | -9.04 | -5.93 |
| Smp_165180.1 | 0 | -1.47 | -9.43 | -12.79 | -7.00 |
| Smp_167350.1 | 0 | -0.80 | -1.92 | -3.39 | -6.34 |
| Smp_168080.2 | 0 | -1.01 | -12.06 | -12.06 | -12.06 |
| Smp_174520.1 | 0 | -1.49 | -5.54 | -1.86 | -3.92 |
| Smp_182770.1 | 0 | -1.46 | -4.03 | -8.25 | -8.62 |
| Smp_184460.1 | 0 | -2.24 | -5.26 | -13.63 | -13.63 |
| Smp_185180.1 | 0 | -1.60 | -2.75 | -5.44 | -6.67 |
| Smp_185220.1 | 0 | -1.31 | -3.59 | -4.11 | -4.96 |
| Smp_185360.1 | 0 | -2.43 | -5.85 | -12.83 | -12.83 |
| Smp_185370.1 | 0 | -0.81 | -2.32 | -9.88 | -9.93 |
| Smp_188900.1 | 0 | -1.35 | -4.02 | -11.76 | -11.76 |
| Smp_195060.1 | 0 | -0.69 | -4.00 | -2.76 | -3.57 |
| Smp_195070.1 | 0 | -1.13 | -9.73 | -18.26 | -16.31 |
| Smp_195110.1 | 0 | -0.78 | -1.68 | -8.24 | -8.43 |
| Smp_195150.1 | 0 | -0.70 | -1.90 | -6.54 | -7.80 |
| Smp_195160.1 | 0 | -1.78 | -3.62 | -7.03 | -7.47 |
| Smp_201900.1 | 0 | -0.73 | -2.99 | -4.99 | -3.71 |
| Smp_202140.1 | 0 | -1.27 | -3.64 | -10.44 | -10.44 |
| Smp_206150.1 | 0 | -1.95 | -4.12 | -11.47 | -11.47 |
| Smp_212290.1 | 0 | -0.97 | -5.67 | -5.14 | -6.52 |
Pearson Correlation Coefficient Data - Download data
| Compared Gene | Gene | Pearson Correlation Value | p-value | B.-H. adjusted p-value |
|---|---|---|---|---|
| Smp_188900.1 | SmLINC00565-IBu | 0.94 | 7.25e-08 | 8.69e-06 |
| Smp_188900.1 | SmLINC00998-IBu | 0.90 | 3.74e-06 | 1.00e-04 |
| Smp_188900.1 | SmLINC02455-IBu | 0.96 | 5.95e-09 | 1.62e-06 |
| Smp_188900.1 | SmLINC04214-IBu | 0.91 | 1.44e-06 | 6.91e-05 |
| Smp_188900.1 | SmLINC04450-IBu | 0.90 | 3.14e-06 | 1.00e-04 |
| Smp_188900.1 | SmLINC04598-IBu | 0.91 | 1.47e-06 | 7.01e-05 |
| Smp_188900.1 | SmLINC04606-IBu | 0.91 | 2.15e-06 | 9.16e-05 |
| Smp_188900.1 | SmLINC04864-IBu | 0.94 | 1.16e-07 | 1.20e-05 |
| Smp_188900.1 | SmLINC06111-IBu | 0.90 | 2.95e-06 | 1.00e-04 |
| Smp_188900.1 | SmLINC06240-IBu | 0.92 | 7.25e-07 | 4.25e-05 |
| Smp_188900.1 | SmLINC06405-IBu | 0.91 | 2.35e-06 | 9.75e-05 |
| Smp_004230.1 | Smp_188900.1 | 0.96 | 1.44e-08 | 2.91e-06 |
| Smp_188900.1 | Smp_005860.1 | 0.96 | 2.62e-09 | 9.47e-07 |
| Smp_188900.1 | Smp_005860.3 | 0.92 | 6.68e-07 | 4.02e-05 |
| Smp_188900.1 | Smp_026450.1 | 0.90 | 3.58e-06 | 1.00e-04 |
| Smp_188900.1 | Smp_028990.2 | 0.90 | 3.90e-06 | 1.00e-04 |
| Smp_188900.1 | Smp_033610.1 | 0.94 | 9.95e-08 | 1.07e-05 |
| Smp_188900.1 | Smp_051230.3 | 0.94 | 1.10e-07 | 1.15e-05 |
| Smp_188900.1 | Smp_051230.4 | 0.92 | 1.01e-06 | 5.39e-05 |
| Smp_188900.1 | Smp_061580.1 | 0.94 | 7.45e-08 | 8.85e-06 |
| Smp_188900.1 | Smp_067980.1 | 0.94 | 6.48e-08 | 8.05e-06 |
| Smp_188900.1 | Smp_074570.1 | 0.91 | 1.28e-06 | 6.35e-05 |
| Smp_077690.1 | Smp_188900.1 | 0.92 | 1.08e-06 | 5.65e-05 |
| Smp_083180.1 | Smp_188900.1 | 0.91 | 1.72e-06 | 7.85e-05 |
| Smp_188900.1 | Smp_085290.3 | 0.91 | 1.47e-06 | 7.01e-05 |
| Smp_097750.1 | Smp_188900.1 | 0.97 | 1.81e-09 | 7.45e-07 |
| Smp_188900.1 | Smp_100600.1 | 0.90 | 4.82e-06 | 1.00e-04 |
| Smp_100790.1 | Smp_188900.1 | 0.96 | 1.44e-08 | 2.91e-06 |
| Smp_106390.1 | Smp_188900.1 | 0.93 | 3.00e-07 | 2.30e-05 |
| Smp_188900.1 | Smp_108050.1 | 0.94 | 1.77e-07 | 1.60e-05 |
| Smp_110400.3 | Smp_188900.1 | 0.96 | 6.72e-09 | 1.75e-06 |
| Smp_188900.1 | Smp_113760.1 | 0.94 | 8.67e-08 | 9.81e-06 |
| Smp_114740.1 | Smp_188900.1 | 0.96 | 1.44e-08 | 2.91e-06 |
| Smp_188900.1 | Smp_119050.1 | 0.96 | 8.08e-09 | 1.98e-06 |
| Smp_188900.1 | Smp_124150.1 | 0.92 | 7.02e-07 | 4.16e-05 |
| Smp_133310.1 | Smp_188900.1 | 0.90 | 3.32e-06 | 1.00e-04 |
| Smp_188900.1 | Smp_140680.2 | 0.92 | 5.46e-07 | 3.49e-05 |
| Smp_145710.1 | Smp_188900.1 | 0.93 | 2.89e-07 | 2.24e-05 |
| Smp_188900.1 | Smp_145810.2 | 0.95 | 2.39e-08 | 4.09e-06 |
| Smp_149670.1 | Smp_188900.1 | 0.92 | 1.16e-06 | 5.93e-05 |
| Smp_188900.1 | Smp_150450.1 | 0.93 | 2.24e-07 | 1.88e-05 |
| Smp_150690.2 | Smp_188900.1 | 0.92 | 6.55e-07 | 3.96e-05 |
| Smp_188900.1 | Smp_154020.1 | 0.90 | 4.27e-06 | 1.00e-04 |
| Smp_188900.1 | Smp_157390.1 | -0.90 | 4.62e-06 | 1.00e-04 |
| Smp_188900.1 | Smp_157450.1 | 0.93 | 4.16e-07 | 2.89e-05 |
| Smp_188900.1 | Smp_159900.1 | 0.95 | 4.98e-08 | 6.74e-06 |
| Smp_188900.1 | Smp_162370.1 | 0.93 | 2.86e-07 | 2.23e-05 |
| Smp_188900.1 | Smp_165180.1 | 0.91 | 1.42e-06 | 6.85e-05 |
| Smp_188900.1 | Smp_167350.1 | 0.91 | 1.23e-06 | 6.19e-05 |
| Smp_188900.1 | Smp_168080.2 | 0.95 | 1.59e-08 | 3.11e-06 |
| Smp_174520.1 | Smp_188900.1 | 0.90 | 4.52e-06 | 1.00e-04 |
| Smp_188900.1 | Smp_182770.1 | 0.98 | 5.98e-12 | 2.00e-08 |
| Smp_188900.1 | Smp_184460.1 | 0.92 | 9.25e-07 | 5.05e-05 |
| Smp_185180.1 | Smp_188900.1 | 0.94 | 9.95e-08 | 1.07e-05 |
| Smp_185220.1 | Smp_188900.1 | 0.95 | 3.32e-08 | 5.12e-06 |
| Smp_188900.1 | Smp_185360.1 | 0.92 | 1.08e-06 | 5.63e-05 |
| Smp_188900.1 | Smp_185370.1 | 0.94 | 8.30e-08 | 9.53e-06 |
| Smp_195060.1 | Smp_188900.1 | 0.91 | 2.03e-06 | 8.81e-05 |
| Smp_188900.1 | Smp_195070.1 | 0.97 | 1.81e-09 | 7.47e-07 |
| Smp_188900.1 | Smp_195110.1 | 0.91 | 2.01e-06 | 8.73e-05 |
| Smp_195150.1 | Smp_188900.1 | 0.90 | 2.71e-06 | 1.00e-04 |
| Smp_188900.1 | Smp_195160.1 | 0.90 | 3.95e-06 | 1.00e-04 |
| Smp_188900.1 | Smp_201900.1 | 0.91 | 1.28e-06 | 6.38e-05 |
| Smp_188900.1 | Smp_202140.1 | 0.94 | 9.23e-08 | 1.02e-05 |
| Smp_206150.1 | Smp_188900.1 | 0.90 | 2.81e-06 | 1.00e-04 |
| Smp_188900.1 | Smp_212290.1 | 0.92 | 9.07e-07 | 4.98e-05 |