Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_188880.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_188880.1 0 -0.67 -5.57 -9.86 -9.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_188880.1 SmLINC03769-IBu 0.82 1.00e-04 1.70e-03
Smp_188880.1 SmLINC06890-IBu 0.89 7.90e-06 2.00e-04
Smp_188880.1 SmLINC06903-IBu 0.86 2.58e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_031000.1 0 -0.87 -10.51 -4.40 -10.51
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_188880.1 0 -0.67 -5.57 -9.86 -9.86
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_031000.1 Smp_188880.1 0.94 8.41e-08 9.62e-06
Smp_182890.1 Smp_188880.1 0.90 3.11e-06 1.00e-04
Smp_192890.1 Smp_188880.1 0.91 2.00e-06 8.72e-05
Smp_205860.1 Smp_188880.1 0.91 2.10e-06 9.01e-05