Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_188780.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04129-IBu 0 2.02 -0.05 -5.02 -3.35
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05178-IBu 0 3.85 -0.08 -1.72 -5.31
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05840-IBu 0 1.40 -1.20 -2.41 -3.85
SmLINC05887-IBu 0 1.98 -0.51 -2.69 -3.80
SmLINC06138-IBu 0 2.13 -1.25 -2.27 -2.28
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_188780.1 0 0.05 -9.06 -3.40 -3.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_188780.1 SmLINC00037-IBu 0.87 2.45e-05 5.00e-04
Smp_188780.1 SmLINC00133-IBu 0.88 1.02e-05 2.00e-04
Smp_188780.1 SmLINC00282-IBu 0.88 1.08e-05 2.00e-04
Smp_188780.1 SmLINC00554-IBu 0.87 2.39e-05 5.00e-04
Smp_188780.1 SmLINC00893-IBu 0.87 1.56e-05 3.00e-04
Smp_188780.1 SmLINC01462-IBu 0.82 1.00e-04 1.80e-03
Smp_188780.1 SmLINC01486-IBu 0.87 2.13e-05 4.00e-04
Smp_188780.1 SmLINC01637-IBu 0.81 2.00e-04 2.60e-03
Smp_188780.1 SmLINC03056-IBu 0.84 8.82e-05 1.20e-03
Smp_188780.1 SmLINC03362-IBu 0.81 2.00e-04 2.40e-03
Smp_188780.1 SmLINC03848-IBu 0.82 1.00e-04 1.90e-03
Smp_188780.1 SmLINC04075-IBu 0.84 8.14e-05 1.20e-03
Smp_188780.1 SmLINC04129-IBu 0.80 3.00e-04 3.20e-03
Smp_188780.1 SmLINC04178-IBu 0.86 2.87e-05 5.00e-04
Smp_188780.1 SmLINC04271-IBu 0.81 2.00e-04 2.60e-03
Smp_188780.1 SmLINC04940-IBu 0.83 9.14e-05 1.30e-03
Smp_188780.1 SmLINC05178-IBu 0.80 2.00e-04 3.00e-03
Smp_188780.1 SmLINC05284-IBu 0.80 3.00e-04 3.40e-03
Smp_188780.1 SmLINC05840-IBu 0.85 4.76e-05 8.00e-04
Smp_188780.1 SmLINC05887-IBu 0.84 7.01e-05 1.00e-03
Smp_188780.1 SmLINC06138-IBu 0.82 1.00e-04 1.70e-03
Smp_188780.1 SmLINC06535-IBu 0.85 4.37e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_188780.1 0 0.05 -9.06 -3.40 -3.54

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_125070.1 Smp_188780.1 0.95 4.29e-08 6.09e-06