Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_188600.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_188600.1 0 -1.05 -3.54 -4.81 -5.04

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_188600.1 SmLINC06892-IBu 0.9 4.75e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_186130.2 0 -1.40 -3.75 -10.97 -9.77
Smp_188600.1 0 -1.05 -3.54 -4.81 -5.04
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_188600.1 Smp_032990.1 0.99 1.59e-12 8.83e-09
Smp_188600.1 Smp_066010.1 0.94 8.71e-08 9.84e-06
Smp_188600.1 Smp_116760.1 0.93 3.50e-07 2.57e-05
Smp_188600.1 Smp_140680.2 0.93 3.73e-07 2.68e-05
Smp_188600.1 Smp_184460.1 0.91 1.49e-06 7.08e-05
Smp_188600.1 Smp_185350.1 0.95 5.38e-08 7.10e-06
Smp_188600.1 Smp_186130.2 0.94 1.07e-07 1.13e-05
Smp_188600.1 Smp_202140.1 0.94 1.73e-07 1.57e-05
Smp_206150.1 Smp_188600.1 0.95 2.68e-08 4.43e-06