Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_187590.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_187590.1 0 -0.60 -3.82 -4.10 -3.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_187590.1 SmLINC06535-IBu 0.87 1.71e-05 3.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_187590.1 0 -0.60 -3.82 -4.10 -3.89

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 Smp_187590.1 0.91 2.21e-06 9.33e-05
Smp_067980.1 Smp_187590.1 0.92 9.74e-07 5.23e-05
Smp_083180.1 Smp_187590.1 0.93 3.43e-07 2.53e-05
Smp_168080.2 Smp_187590.1 0.90 2.86e-06 1.00e-04
Smp_182090.1 Smp_187590.1 0.90 3.99e-06 1.00e-04