Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_187070.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02581-IBu 0 11.96 10.32 13.16 12.10
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04054-IBu 0 0.17 -0.60 5.38 2.72
SmLINC04345-IBu 0 -0.21 -0.00 6.97 4.53
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04663-IBu 0 -2.56 -3.27 2.68 1.54
SmLINC04747-IBu 0 6.14 4.80 9.94 4.77
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC04769-IBu 0 1.36 2.94 5.73 3.10
SmLINC05009-IBu 0 0.41 -0.30 3.78 1.52
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05171-IBu 0 -0.19 -0.55 5.90 3.90
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC06007-IBu 0 -3.84 -0.77 4.39 2.11
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06418-IBu 0 -2.45 2.43 6.45 5.75
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06536-IBu 0 -3.65 0.03 5.24 4.25
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_187070.1 0 5.70 4.34 9.56 8.27

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_187070.1 SmLINC00171-IBu 0.84 6.12e-05 9.00e-04
Smp_187070.1 SmLINC00369-IBu 0.83 1.00e-04 1.60e-03
Smp_187070.1 SmLINC00477-IBu 0.93 3.68e-07 2.53e-05
Smp_187070.1 SmLINC00484-IBu 0.93 5.06e-07 3.17e-05
Smp_187070.1 SmLINC00633-IBu 0.83 9.56e-05 1.30e-03
Smp_187070.1 SmLINC01066-IBu 0.87 1.63e-05 3.00e-04
Smp_187070.1 SmLINC01139-IBu 0.83 9.90e-05 1.40e-03
Smp_187070.1 SmLINC01433-IBu 0.95 4.82e-08 6.22e-06
Smp_187070.1 SmLINC01435-IBu 0.88 1.04e-05 2.00e-04
Smp_187070.1 SmLINC01538-IBu 0.83 1.00e-04 1.60e-03
Smp_187070.1 SmLINC01569-IBu 0.80 3.00e-04 3.10e-03
Smp_187070.1 SmLINC01746-IBu 0.82 1.00e-04 2.10e-03
Smp_187070.1 SmLINC01822-IBu 0.94 8.81e-08 9.40e-06
Smp_187070.1 SmLINC02581-IBu 0.83 1.00e-04 1.40e-03
Smp_187070.1 SmLINC03309-IBu 0.85 4.71e-05 8.00e-04
Smp_187070.1 SmLINC03542-IBu 0.95 1.99e-08 3.40e-06
Smp_187070.1 SmLINC03693-IBu 0.92 8.69e-07 4.64e-05
Smp_187070.1 SmLINC04054-IBu 0.88 1.07e-05 2.00e-04
Smp_187070.1 SmLINC04345-IBu 0.84 6.87e-05 1.00e-03
Smp_187070.1 SmLINC04521-IBu 0.86 2.51e-05 5.00e-04
Smp_187070.1 SmLINC04663-IBu 0.87 1.76e-05 4.00e-04
Smp_187070.1 SmLINC04747-IBu 0.82 1.00e-04 1.80e-03
Smp_187070.1 SmLINC04759-IBu 0.93 1.97e-07 1.64e-05
Smp_187070.1 SmLINC04769-IBu 0.90 4.79e-06 1.00e-04
Smp_187070.1 SmLINC05009-IBu 0.90 4.42e-06 1.00e-04
Smp_187070.1 SmLINC05147-IBu 0.86 3.77e-05 6.00e-04
Smp_187070.1 SmLINC05171-IBu 0.89 5.79e-06 1.00e-04
Smp_187070.1 SmLINC05258-IBu 0.85 4.57e-05 7.00e-04
Smp_187070.1 SmLINC06007-IBu 0.89 5.99e-06 1.00e-04
Smp_187070.1 SmLINC06145-IBu 0.81 2.00e-04 2.60e-03
Smp_187070.1 SmLINC06221-IBu 0.93 5.05e-07 3.16e-05
Smp_187070.1 SmLINC06418-IBu 0.82 1.00e-04 1.70e-03
Smp_187070.1 SmLINC06449-IBu 0.85 5.43e-05 9.00e-04
Smp_187070.1 SmLINC06536-IBu 0.85 4.56e-05 7.00e-04
Smp_187070.1 SmLINC06538-IBu 0.95 2.58e-08 4.06e-06
Smp_187070.1 SmLINC06543-IBu 0.91 2.16e-06 8.87e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_005470.1 0 4.39 7.68 10.83 9.26
Smp_014780.1 0 9.27 11.17 13.92 13.01
Smp_045200.1 0 3.00 7.71 11.33 10.66
Smp_058140.3 0 6.20 8.66 11.88 11.12
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_082580.1 0 4.26 1.47 10.78 9.72
Smp_084270.1 0 3.51 4.06 10.11 8.38
Smp_105730.1 0 0.00 0.00 11.80 9.62
Smp_118560.1 0 6.31 8.12 10.54 9.19
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_131840.1 0 1.87 2.16 10.14 8.34
Smp_134960.1 0 -1.83 4.14 10.34 9.04
Smp_137320.1 0 0.00 5.10 10.68 10.40
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_154180.1 0 5.56 0.00 15.37 13.48
Smp_163940.1 0 2.69 6.26 10.12 8.26
Smp_172520.1 0 3.57 6.60 11.28 9.54
Smp_175020.1 0 5.88 8.81 11.73 9.58
Smp_187070.1 0 5.70 4.34 9.56 8.27
Smp_194960.1 0 0.00 0.00 17.20 15.87
Smp_194970.1 0 6.28 10.15 15.43 13.82
Smp_194980.1 0 2.89 8.17 12.59 10.55
Smp_197400.1 0 0.00 0.00 10.12 7.45
Smp_200750.1 0 1.72 7.25 10.11 8.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_005470.1 Smp_187070.1 0.95 1.78e-08 3.36e-06
Smp_014780.1 Smp_187070.1 0.90 4.49e-06 1.00e-04
Smp_045200.1 Smp_187070.1 0.90 2.91e-06 1.00e-04
Smp_058140.3 Smp_187070.1 0.90 3.89e-06 1.00e-04
Smp_081920.1 Smp_187070.1 0.95 1.51e-08 3.01e-06
Smp_082580.1 Smp_187070.1 0.94 1.42e-07 1.37e-05
Smp_187070.1 Smp_084270.1 0.90 2.98e-06 1.00e-04
Smp_105730.1 Smp_187070.1 0.93 3.20e-07 2.41e-05
Smp_118560.1 Smp_187070.1 0.94 1.65e-07 1.52e-05
Smp_123200.1 Smp_187070.1 0.95 2.68e-08 4.42e-06
Smp_131840.1 Smp_187070.1 0.93 3.99e-07 2.81e-05
Smp_134960.1 Smp_187070.1 0.92 6.46e-07 3.93e-05
Smp_137320.1 Smp_187070.1 0.90 3.72e-06 1.00e-04
Smp_141680.1 Smp_187070.1 0.92 1.04e-06 5.50e-05
Smp_154180.1 Smp_187070.1 0.92 9.18e-07 5.02e-05
Smp_163940.1 Smp_187070.1 0.93 4.83e-07 3.20e-05
Smp_172520.1 Smp_187070.1 0.95 4.45e-08 6.24e-06
Smp_187070.1 Smp_175020.1 0.90 3.34e-06 1.00e-04
Smp_194960.1 Smp_187070.1 0.93 3.02e-07 2.32e-05
Smp_187070.1 Smp_194970.1 0.94 8.57e-08 9.74e-06
Smp_194980.1 Smp_187070.1 0.94 6.70e-08 8.23e-06
Smp_197400.1 Smp_187070.1 0.90 3.23e-06 1.00e-04
Smp_200750.1 Smp_187070.1 0.90 4.65e-06 1.00e-04