Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_187030.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
Smp_187030.1 0 -1.05 0.53 2.40 4.29

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_187030.1 SmLINC00001-IBu 0.92 6.18e-07 3.65e-05
Smp_187030.1 SmLINC00004-IBu 0.90 4.67e-06 1.00e-04
Smp_187030.1 SmLINC01520-IBu 0.81 1.00e-04 2.20e-03
Smp_187030.1 SmLINC02376-IBu 0.92 6.86e-07 3.93e-05
Smp_187030.1 SmLINC02394-IBu 0.85 5.04e-05 8.00e-04
Smp_187030.1 SmLINC02539-IBu 0.83 1.00e-04 1.50e-03
Smp_187030.1 SmLINC02577-IBu 0.85 5.84e-05 9.00e-04
Smp_187030.1 SmLINC02783-IBu 0.85 4.41e-05 7.00e-04
Smp_187030.1 SmLINC03326-IBu 0.89 5.09e-06 1.00e-04
Smp_187030.1 SmLINC04235-IBu 0.92 6.83e-07 3.92e-05
Smp_187030.1 SmLINC04423-IBu 0.81 2.00e-04 2.30e-03
Smp_187030.1 SmLINC04627-IBu 0.88 1.27e-05 3.00e-04
Smp_187030.1 SmLINC05289-IBu 0.81 1.00e-04 2.20e-03
Smp_187030.1 SmLINC05404-IBu 0.80 2.00e-04 3.00e-03
Smp_187030.1 SmLINC05604-IBu 0.81 2.00e-04 2.30e-03
Smp_187030.1 SmLINC05684-IBu 0.84 7.88e-05 1.10e-03
Smp_187030.1 SmLINC06239-IBu 0.90 3.67e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_000390.1 0 1.88 0.00 5.14 11.86
Smp_004420.3 0 0.00 5.84 10.64 14.52
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_085180.1 0 1.48 5.09 10.70 12.92
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137720.1 0 0.96 3.51 9.34 11.95
Smp_144440.1 0 7.66 6.96 9.39 14.48
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_162320.1 0 0.58 2.27 8.70 11.23
Smp_164320.1 0 0.97 4.76 9.93 12.08
Smp_175560.1 0 1.88 2.67 7.60 12.31
Smp_187030.1 0 -1.05 0.53 2.40 4.29
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_000390.1 Smp_187030.1 0.90 4.44e-06 1.00e-04
Smp_004420.3 Smp_187030.1 0.90 3.83e-06 1.00e-04
Smp_016490.2 Smp_187030.1 0.92 9.76e-07 5.24e-05
Smp_187030.1 Smp_024180.1 0.91 1.46e-06 6.96e-05
Smp_024180.2 Smp_187030.1 0.91 2.43e-06 9.98e-05
Smp_187030.1 Smp_028870.1 0.93 4.46e-07 3.03e-05
Smp_085180.1 Smp_187030.1 0.92 1.03e-06 5.45e-05
Smp_187030.1 Smp_102780.1 0.92 1.16e-06 5.92e-05
Smp_187030.1 Smp_130100.1 0.91 1.49e-06 7.07e-05
Smp_187030.1 Smp_131490.1 0.94 9.48e-08 1.04e-05
Smp_137720.1 Smp_187030.1 0.91 2.01e-06 8.73e-05
Smp_144440.1 Smp_187030.1 0.91 1.62e-06 7.50e-05
Smp_159650.1 Smp_187030.1 0.95 4.17e-08 5.97e-06
Smp_162320.1 Smp_187030.1 0.91 2.48e-06 1.00e-04
Smp_187030.1 Smp_164320.1 0.90 3.10e-06 1.00e-04
Smp_175560.1 Smp_187030.1 0.91 1.86e-06 8.26e-05
Smp_187030.1 Smp_202610.1 0.91 1.78e-06 8.02e-05
Smp_203030.1 Smp_187030.1 0.91 1.37e-06 6.67e-05