Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_186610.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_186610.1 SmLINC02678-IBu 0.80 3.00e-04 3.20e-03
Smp_186610.1 SmLINC06892-IBu 0.93 5.14e-07 3.21e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_009650.2 Smp_186610.1 0.95 5.10e-08 6.85e-06
Smp_032990.1 Smp_186610.1 0.95 5.74e-08 7.41e-06
Smp_036400.2 Smp_186610.1 0.91 1.55e-06 7.27e-05
Smp_065580.1 Smp_186610.1 0.93 4.78e-07 3.18e-05
Smp_066010.1 Smp_186610.1 0.95 1.72e-08 3.28e-06
Smp_133770.1 Smp_186610.1 0.92 1.17e-06 5.98e-05
Smp_186610.1 Smp_153240.1 0.90 2.91e-06 1.00e-04
Smp_178240.1 Smp_186610.1 0.92 5.60e-07 3.55e-05
Smp_183020.1 Smp_186610.1 0.91 2.21e-06 9.33e-05
Smp_183020.6 Smp_186610.1 0.91 2.21e-06 9.33e-05
Smp_184460.1 Smp_186610.1 0.95 1.97e-08 3.59e-06
Smp_185360.1 Smp_186610.1 0.93 3.27e-07 2.45e-05
Smp_206150.1 Smp_186610.1 0.94 1.01e-07 1.09e-05