Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_186230.1 Data

Correlation between Smp_186230.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_186230.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00554-IBu 0 -0.37 -11.45 -11.45 -2.78
SmLINC00556-IBu 0 -0.74 -2.79 -5.06 -5.28
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_186230.1 0 -0.68 -2.99 -6.79 -6.79

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_186230.1 SmLINC00282-IBu 0.80 2.00e-04 3.00e-03
Smp_186230.1 SmLINC00554-IBu 0.80 3.00e-04 3.30e-03
Smp_186230.1 SmLINC00556-IBu 0.80 3.00e-04 3.20e-03
Smp_186230.1 SmLINC02255-IBu 0.85 4.27e-05 7.00e-04
Smp_186230.1 SmLINC02657-IBu 0.80 2.00e-04 2.70e-03
Smp_186230.1 SmLINC05274-IBu 0.80 3.00e-04 3.40e-03
Smp_186230.1 SmLINC05284-IBu 0.87 1.82e-05 4.00e-04
Smp_186230.1 SmLINC05720-IBu 0.80 2.00e-04 2.90e-03
Smp_186230.1 SmLINC05989-IBu 0.86 2.60e-05 5.00e-04
Smp_186230.1 SmLINC06903-IBu 0.85 5.40e-05 9.00e-04

Correlation between Smp_186230.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data