Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_186130.2 Data


Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_065470.1 0 -2.41 -6.05 -1.95 -2.93
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_186130.2 0 -1.40 -3.75 -10.97 -9.77
Smp_188600.1 0 -1.05 -3.54 -4.81 -5.04
Smp_199230.1 0 -8.78 -8.78 -3.51 -8.10
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_201320.1 0 -1.71 -5.69 -7.19 -7.19
Smp_202540.1 0 -2.41 -1.38 -6.47 -8.50
Smp_203980.1 0 -0.92 -4.57 -6.89 -8.25
Smp_205870.1 0 -0.54 -2.25 -7.61 -12.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_186130.2 Smp_032990.1 0.94 1.27e-07 1.27e-05
Smp_065470.1 Smp_186130.2 0.90 3.09e-06 1.00e-04
Smp_116760.1 Smp_186130.2 0.98 3.77e-11 6.31e-08
Smp_186130.2 Smp_185350.1 0.96 3.71e-09 1.19e-06
Smp_188600.1 Smp_186130.2 0.94 1.07e-07 1.13e-05
Smp_199230.1 Smp_186130.2 0.91 1.60e-06 7.46e-05
Smp_186130.2 Smp_199840.1 0.92 8.63e-07 4.81e-05
Smp_201320.1 Smp_186130.2 0.94 1.10e-07 1.15e-05
Smp_202540.1 Smp_186130.2 0.91 2.32e-06 9.67e-05
Smp_186130.2 Smp_203980.1 0.95 3.03e-08 4.81e-06
Smp_205870.1 Smp_186130.2 0.92 9.54e-07 5.16e-05