Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_186130.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_186130.1 SmLINC04957-IBu 0.85 5.63e-05 9.00e-04
Smp_186130.1 SmLINC05274-IBu 0.82 1.00e-04 2.10e-03
Smp_186130.1 SmLINC06890-IBu 0.93 2.76e-07 2.07e-05
Smp_186130.1 SmLINC06903-IBu 0.88 1.10e-05 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00093-IBu 0 -1.11 -3.33 -5.06 -7.16
SmLINC00298-IBu 0 -1.03 -2.32 -8.70 -8.70
SmLINC00568-IBu 0 -1.41 -4.15 -10.91 -11.85
SmLINC01675-IBu 0 -0.80 -1.29 -3.92 -5.49
SmLINC03574-IBu 0 -1.17 -2.16 -3.29 -5.27
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
Smp_000330.1 0 -3.46 -5.35 -5.35 -5.35
Smp_002510.1 0 -3.00 -2.99 -4.71 -4.29
Smp_005880.1 0 -1.71 -5.17 -4.43 -5.19
Smp_007270.2 0 -4.80 -3.78 -12.58 -12.58
Smp_009310.4 0 -2.57 -4.50 -7.03 -8.00
Smp_009650.1 0 -2.22 -4.12 -4.36 -3.86
Smp_010000.1 0 -1.51 -3.27 -4.59 -5.75
Smp_014670.1 0 -1.55 -1.47 -4.90 -6.50
Smp_016730.1 0 -3.42 -4.55 -5.13 -5.31
Smp_020550.1 0 -3.71 -4.02 -4.24 -5.10
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_062720.2 0 -4.51 -3.77 -3.48 -4.71
Smp_076010.1 0 -2.03 -5.17 -3.81 -3.82
Smp_083340.1 0 -1.27 -1.69 -7.43 -6.68
Smp_124340.1 0 -2.62 -4.99 -7.42 -3.75
Smp_137520.1 0 -2.84 -5.66 -3.12 -4.79
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_159420.1 0 -3.00 -1.04 -3.65 -4.76
Smp_174560.1 0 -1.74 -2.28 -5.34 -5.48
Smp_175190.1 0 -3.40 -5.32 -6.00 -5.17
Smp_177520.1 0 -1.05 -1.72 -9.36 -8.37
Smp_178530.1 0 -1.33 -2.48 -5.11 -6.02
Smp_178630.1 0 -1.78 -5.50 -9.26 -9.26
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_183020.13 0 -3.91 -2.91 -8.65 -5.43
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_196050.1 0 -3.12 -5.35 -6.02 -6.99
Smp_200320.1 0 -2.27 -7.31 -5.59 -8.81
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_186130.1 SmLINC00093-IBu 0.91 1.23e-06 6.17e-05
Smp_186130.1 SmLINC00298-IBu 0.94 1.39e-07 1.36e-05
Smp_186130.1 SmLINC00568-IBu 0.93 4.63e-07 3.11e-05
Smp_186130.1 SmLINC01675-IBu 0.90 3.44e-06 1.00e-04
Smp_186130.1 SmLINC03574-IBu 0.92 5.50e-07 3.51e-05
Smp_186130.1 SmLINC06890-IBu 0.93 2.76e-07 2.17e-05
Smp_000330.1 Smp_186130.1 0.90 2.97e-06 1.00e-04
Smp_002510.1 Smp_186130.1 0.92 6.21e-07 3.82e-05
Smp_005880.1 Smp_186130.1 0.91 1.93e-06 8.49e-05
Smp_007270.2 Smp_186130.1 0.91 2.49e-06 1.00e-04
Smp_009310.4 Smp_186130.1 0.91 1.55e-06 7.29e-05
Smp_009650.1 Smp_186130.1 0.92 6.99e-07 4.15e-05
Smp_010000.1 Smp_186130.1 0.90 2.85e-06 1.00e-04
Smp_014670.1 Smp_186130.1 0.97 7.04e-10 4.07e-07
Smp_016730.1 Smp_186130.1 0.90 2.87e-06 1.00e-04
Smp_020550.1 Smp_186130.1 0.93 3.85e-07 2.74e-05
Smp_043670.2 Smp_186130.1 0.95 1.67e-08 3.22e-06
Smp_062720.2 Smp_186130.1 0.92 1.11e-06 5.77e-05
Smp_076010.1 Smp_186130.1 0.90 4.62e-06 1.00e-04
Smp_083340.1 Smp_186130.1 0.94 6.28e-08 7.88e-06
Smp_124340.1 Smp_186130.1 0.93 3.02e-07 2.32e-05
Smp_137520.1 Smp_186130.1 0.91 1.74e-06 7.89e-05
Smp_140270.1 Smp_186130.1 0.96 8.84e-09 2.10e-06
Smp_159420.1 Smp_186130.1 0.90 3.52e-06 1.00e-04
Smp_174560.1 Smp_186130.1 0.94 1.21e-07 1.23e-05
Smp_175190.1 Smp_186130.1 0.92 1.19e-06 6.05e-05
Smp_177520.1 Smp_186130.1 0.92 6.72e-07 4.03e-05
Smp_186130.1 Smp_178530.1 0.90 3.07e-06 1.00e-04
Smp_178630.1 Smp_186130.1 0.92 9.45e-07 5.13e-05
Smp_182890.1 Smp_186130.1 0.96 9.58e-09 2.21e-06
Smp_183020.13 Smp_186130.1 0.91 1.78e-06 8.02e-05
Smp_192890.1 Smp_186130.1 0.93 2.99e-07 2.30e-05
Smp_196050.1 Smp_186130.1 0.92 5.22e-07 3.38e-05
Smp_200320.1 Smp_186130.1 0.92 9.68e-07 5.21e-05
Smp_205550.1 Smp_186130.1 0.97 3.81e-10 2.75e-07
Smp_205860.1 Smp_186130.1 0.91 2.41e-06 9.92e-05
Smp_206200.1 Smp_186130.1 0.92 1.04e-06 5.51e-05