Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_185900.1 Data

Correlation between Smp_185900.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_185900.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC03485-IBu 0 -0.93 -1.24 -9.54 -9.54
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
Smp_185900.1 0 -1.18 -1.69 -5.74 -6.26

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185900.1 SmLINC00004-IBu -0.82 1.00e-04 1.90e-03
Smp_185900.1 SmLINC00369-IBu -0.82 1.00e-04 2.00e-03
Smp_185900.1 SmLINC00376-IBu -0.80 3.00e-04 3.40e-03
Smp_185900.1 SmLINC00525-IBu -0.90 4.52e-06 1.00e-04
Smp_185900.1 SmLINC01084-IBu -0.88 1.43e-05 3.00e-04
Smp_185900.1 SmLINC01431-IBu -0.84 6.81e-05 1.00e-03
Smp_185900.1 SmLINC02084-IBu -0.82 1.00e-04 2.10e-03
Smp_185900.1 SmLINC03485-IBu 0.81 2.00e-04 2.70e-03
Smp_185900.1 SmLINC03849-IBu 0.83 1.00e-04 1.50e-03
Smp_185900.1 SmLINC04421-IBu -0.84 8.55e-05 1.20e-03
Smp_185900.1 SmLINC05604-IBu -0.81 2.00e-04 2.30e-03
Smp_185900.1 SmLINC06024-IBu -0.84 8.06e-05 1.20e-03

Correlation between Smp_185900.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data