Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_185370.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_185370.1 0 -0.81 -2.32 -9.88 -9.93

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185370.1 SmLINC00037-IBu 0.84 7.96e-05 1.10e-03
Smp_185370.1 SmLINC00133-IBu 0.83 9.61e-05 1.30e-03
Smp_185370.1 SmLINC00282-IBu 0.87 1.62e-05 3.00e-04
Smp_185370.1 SmLINC01486-IBu 0.82 1.00e-04 2.00e-03
Smp_185370.1 SmLINC01637-IBu 0.85 4.42e-05 7.00e-04
Smp_185370.1 SmLINC02255-IBu 0.93 2.92e-07 2.16e-05
Smp_185370.1 SmLINC02630-IBu 0.95 2.40e-08 3.87e-06
Smp_185370.1 SmLINC02657-IBu 0.87 1.63e-05 3.00e-04
Smp_185370.1 SmLINC03848-IBu 0.88 1.37e-05 3.00e-04
Smp_185370.1 SmLINC03930-IBu 0.90 3.48e-06 1.00e-04
Smp_185370.1 SmLINC04366-IBu 0.82 1.00e-04 2.00e-03
Smp_185370.1 SmLINC05284-IBu 0.90 3.37e-06 1.00e-04
Smp_185370.1 SmLINC05716-IBu 0.84 6.31e-05 1.00e-03
Smp_185370.1 SmLINC05720-IBu 0.89 7.44e-06 2.00e-04
Smp_185370.1 SmLINC05989-IBu 0.80 2.00e-04 3.00e-03
Smp_185370.1 SmLINC06128-IBu 0.83 1.00e-04 1.60e-03
Smp_185370.1 SmLINC06535-IBu 0.95 5.38e-08 6.71e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_185370.1 0 -0.81 -2.32 -9.88 -9.93
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_032970.1 Smp_185370.1 0.91 1.39e-06 6.74e-05
Smp_185370.1 Smp_035200.3 0.91 1.39e-06 6.75e-05
Smp_185370.1 Smp_036270.4 0.94 1.41e-07 1.37e-05
Smp_077690.1 Smp_185370.1 0.94 1.24e-07 1.26e-05
Smp_185370.1 Smp_160230.1 0.94 7.11e-08 8.57e-06
Smp_185370.1 Smp_168080.2 0.92 6.78e-07 4.06e-05
Smp_188900.1 Smp_185370.1 0.94 8.30e-08 9.53e-06
Smp_185370.1 Smp_195070.1 0.92 1.12e-06 5.78e-05
Smp_202140.1 Smp_185370.1 0.91 1.28e-06 6.36e-05