Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_185360.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02039-IBu 0 -3.01 -8.41 -3.05 -3.36
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185360.1 SmLINC02039-IBu 0.83 9.14e-05 1.30e-03
Smp_185360.1 SmLINC02678-IBu 0.84 8.33e-05 1.20e-03
Smp_185360.1 SmLINC02888-IBu 0.85 3.99e-05 7.00e-04
Smp_185360.1 SmLINC06128-IBu 0.89 5.43e-06 1.00e-04
Smp_185360.1 SmLINC06892-IBu 0.92 6.75e-07 3.88e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_003770.1 0 -2.73 -3.76 -4.30 -3.65
Smp_005860.1 0 -1.88 -5.14 -8.12 -7.71
Smp_005860.3 0 -2.06 -4.24 -7.23 -8.92
Smp_006560.1 0 -3.55 -6.46 -6.31 -5.44
Smp_009390.1 0 -2.49 -4.72 -3.30 -3.76
Smp_009650.2 0 -7.49 -7.79 -8.95 -11.71
Smp_014400.5 0 -2.15 -4.06 -6.32 -9.42
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_019750.2 0 -2.70 -5.17 -4.10 -4.19
Smp_022430.1 0 -3.19 -4.81 -4.61 -4.50
Smp_028990.2 0 -2.03 -4.85 -4.73 -6.76
Smp_033610.1 0 -2.04 -4.32 -5.07 -4.63
Smp_036400.2 0 -2.63 -11.95 -8.03 -7.25
Smp_038560.6 0 -3.08 -4.79 -5.99 -7.18
Smp_042160.1 0 -2.29 -5.11 -4.28 -4.75
Smp_046090.1 0 -4.19 -6.28 -7.15 -8.65
Smp_052060.1 0 -2.31 -3.14 -4.09 -3.50
Smp_057060.1 0 -3.71 -5.93 -6.06 -6.08
Smp_057790.1 0 -3.82 -7.29 -4.86 -7.43
Smp_059930.1 0 -3.75 -7.72 -3.31 -3.23
Smp_061580.1 0 -1.55 -4.87 -3.14 -2.48
Smp_061870.1 0 -2.53 -4.47 -5.29 -5.38
Smp_061940.1 0 -2.48 -6.54 -5.15 -5.02
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_066010.1 0 -2.34 -10.90 -6.48 -4.88
Smp_074570.1 0 -1.85 -4.23 -8.15 -8.27
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_097750.1 0 -1.63 -3.99 -4.48 -3.56
Smp_099420.1 0 -2.79 -4.14 -4.04 -2.98
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_105610.1 0 -3.66 -7.36 -5.82 -7.17
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_108050.1 0 -2.06 -3.07 -8.81 -9.10
Smp_110400.3 0 -1.47 -2.30 -8.95 -9.88
Smp_113710.1 0 -3.35 -5.78 -3.90 -2.82
Smp_113760.1 0 -1.77 -5.35 -7.90 -7.26
Smp_120920.3 0 -1.87 -3.40 -3.67 -4.06
Smp_129190.1 0 -4.25 -6.94 -3.48 -4.65
Smp_133310.1 0 -1.74 -4.20 -4.35 -4.73
Smp_133770.1 0 -4.18 -7.68 -11.38 -11.45
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_135250.1 0 -4.50 -7.60 -5.52 -7.87
Smp_145340.1 0 -2.62 -9.51 -6.28 -7.06
Smp_145710.1 0 -1.79 -2.79 -7.90 -7.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_148800.1 0 -3.26 -5.77 -5.61 -4.70
Smp_149190.1 0 -3.08 -5.94 -9.47 -9.18
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_153240.1 0 -4.59 -8.67 -11.23 -11.04
Smp_154020.1 0 -1.89 -2.51 -3.88 -5.45
Smp_154300.1 0 -4.18 -5.59 -3.13 -4.15
Smp_157310.1 0 -3.02 -6.78 -4.07 -5.91
Smp_168380.1 0 -1.89 -2.82 -9.66 -9.66
Smp_169190.1 0 -3.08 -5.99 -19.20 -16.89
Smp_178240.1 0 -3.79 -9.33 -8.87 -11.00
Smp_179460.1 0 -2.52 -7.07 -4.09 -3.97
Smp_179640.1 0 -2.62 -9.51 -6.28 -7.06
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_183420.1 0 -2.62 -9.51 -6.28 -7.06
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_184750.1 0 -1.93 -3.13 -4.74 -4.46
Smp_185180.1 0 -1.60 -2.75 -5.44 -6.67
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_190590.1 0 -2.59 -2.98 -7.31 -8.64
Smp_192880.1 0 -2.57 -3.41 -5.24 -6.71
Smp_194040.1 0 -2.17 -6.63 -5.72 -6.95
Smp_195160.1 0 -1.78 -3.62 -7.03 -7.47
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_202700.1 0 -2.94 -2.50 -4.90 -6.94
Smp_205080.1 0 -1.33 -0.97 -6.34 -7.04
Smp_205190.1 0 -5.03 -3.88 -4.78 -3.78
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185360.1 SmLINC06892-IBu 0.92 6.75e-07 4.05e-05
Smp_003770.1 Smp_185360.1 0.92 6.74e-07 4.04e-05
Smp_005860.1 Smp_185360.1 0.97 8.62e-10 4.63e-07
Smp_185360.1 Smp_005860.3 0.97 5.69e-10 3.55e-07
Smp_006560.1 Smp_185360.1 0.96 1.31e-08 2.74e-06
Smp_009390.1 Smp_185360.1 0.93 4.84e-07 3.21e-05
Smp_185360.1 Smp_009650.2 0.91 1.42e-06 6.84e-05
Smp_014400.5 Smp_185360.1 0.92 1.07e-06 5.59e-05
Smp_185360.1 Smp_018880.1 0.95 1.55e-08 3.07e-06
Smp_019750.2 Smp_185360.1 0.94 1.36e-07 1.33e-05
Smp_185360.1 Smp_022430.1 0.96 2.80e-09 9.89e-07
Smp_185360.1 Smp_028990.2 0.92 6.55e-07 3.96e-05
Smp_185360.1 Smp_033610.1 0.98 5.86e-11 8.33e-08
Smp_036400.2 Smp_185360.1 0.92 7.39e-07 4.31e-05
Smp_038560.6 Smp_185360.1 0.97 1.92e-10 1.76e-07
Smp_042160.1 Smp_185360.1 0.97 3.09e-10 2.40e-07
Smp_185360.1 Smp_046090.1 0.93 2.90e-07 2.25e-05
Smp_185360.1 Smp_052060.1 0.91 1.53e-06 7.20e-05
Smp_185360.1 Smp_057060.1 0.94 1.72e-07 1.57e-05
Smp_185360.1 Smp_057790.1 0.90 2.87e-06 1.00e-04
Smp_059930.1 Smp_185360.1 0.92 6.27e-07 3.84e-05
Smp_185360.1 Smp_061580.1 0.94 6.61e-08 8.16e-06
Smp_061870.1 Smp_185360.1 0.93 2.09e-07 1.80e-05
Smp_061940.1 Smp_185360.1 0.98 5.60e-12 1.92e-08
Smp_185360.1 Smp_065580.1 0.92 5.76e-07 3.63e-05
Smp_066010.1 Smp_185360.1 0.92 5.39e-07 3.46e-05
Smp_074570.1 Smp_185360.1 0.95 3.39e-08 5.19e-06
Smp_185360.1 Smp_085290.3 0.97 5.84e-10 3.61e-07
Smp_097750.1 Smp_185360.1 0.94 7.38e-08 8.80e-06
Smp_099420.1 Smp_185360.1 0.94 1.44e-07 1.39e-05
Smp_102670.1 Smp_185360.1 0.96 8.89e-09 2.11e-06
Smp_185360.1 Smp_105610.1 0.97 1.94e-09 7.81e-07
Smp_106390.1 Smp_185360.1 0.97 7.25e-10 4.15e-07
Smp_185360.1 Smp_108050.1 0.95 1.49e-08 2.98e-06
Smp_110400.3 Smp_185360.1 0.94 8.65e-08 9.80e-06
Smp_113710.1 Smp_185360.1 0.94 1.10e-07 1.15e-05
Smp_185360.1 Smp_113760.1 0.98 1.41e-10 1.45e-07
Smp_185360.1 Smp_120920.3 0.92 1.12e-06 5.78e-05
Smp_129190.1 Smp_185360.1 0.90 4.86e-06 1.00e-04
Smp_133310.1 Smp_185360.1 0.94 8.47e-08 9.66e-06
Smp_185360.1 Smp_133770.1 0.96 9.44e-09 2.19e-06
Smp_134410.1 Smp_185360.1 0.90 2.90e-06 1.00e-04
Smp_185360.1 Smp_135250.1 0.92 5.50e-07 3.51e-05
Smp_145340.1 Smp_185360.1 0.93 3.14e-07 2.38e-05
Smp_145710.1 Smp_185360.1 0.94 7.65e-08 9.02e-06
Smp_145810.2 Smp_185360.1 0.95 5.05e-08 6.80e-06
Smp_148800.1 Smp_185360.1 0.96 1.16e-08 2.53e-06
Smp_149190.1 Smp_185360.1 0.95 5.52e-08 7.22e-06
Smp_149670.1 Smp_185360.1 0.92 5.89e-07 3.68e-05
Smp_150690.2 Smp_185360.1 0.97 1.41e-09 6.36e-07
Smp_185360.1 Smp_153240.1 0.95 1.63e-08 3.16e-06
Smp_154020.1 Smp_185360.1 0.94 1.14e-07 1.18e-05
Smp_154300.1 Smp_185360.1 0.92 7.33e-07 4.29e-05
Smp_185360.1 Smp_157310.1 0.95 1.66e-08 3.21e-06
Smp_168380.1 Smp_185360.1 0.92 9.48e-07 5.14e-05
Smp_185360.1 Smp_169190.1 0.94 1.84e-07 1.64e-05
Smp_178240.1 Smp_185360.1 0.97 8.53e-10 4.60e-07
Smp_185360.1 Smp_179460.1 0.92 1.14e-06 5.87e-05
Smp_185360.1 Smp_179640.1 0.93 3.14e-07 2.38e-05
Smp_185360.1 Smp_182770.1 0.94 6.30e-08 7.90e-06
Smp_185360.1 Smp_183420.1 0.93 3.14e-07 2.38e-05
Smp_185360.1 Smp_184460.1 0.98 2.08e-12 1.04e-08
Smp_184750.1 Smp_185360.1 0.90 3.55e-06 1.00e-04
Smp_185180.1 Smp_185360.1 0.93 2.86e-07 2.23e-05
Smp_185220.1 Smp_185360.1 0.92 5.65e-07 3.58e-05
Smp_185360.1 Smp_186610.1 0.93 3.27e-07 2.45e-05
Smp_188900.1 Smp_185360.1 0.92 1.08e-06 5.63e-05
Smp_190320.1 Smp_185360.1 0.94 1.78e-07 1.61e-05
Smp_185360.1 Smp_190590.1 0.91 1.29e-06 6.41e-05
Smp_192880.1 Smp_185360.1 0.95 2.01e-08 3.65e-06
Smp_185360.1 Smp_194040.1 0.97 1.56e-09 6.79e-07
Smp_185360.1 Smp_195160.1 0.90 3.60e-06 1.00e-04
Smp_185360.1 Smp_199840.1 0.93 3.38e-07 2.50e-05
Smp_202140.1 Smp_185360.1 0.90 3.11e-06 1.00e-04
Smp_202700.1 Smp_185360.1 0.96 2.98e-09 1.03e-06
Smp_205080.1 Smp_185360.1 0.91 1.79e-06 8.05e-05
Smp_205190.1 Smp_185360.1 0.92 1.01e-06 5.38e-05
Smp_185360.1 Smp_205900.1 0.95 3.16e-08 4.95e-06
Smp_206130.1 Smp_185360.1 0.91 2.50e-06 1.00e-04
Smp_206150.1 Smp_185360.1 0.96 1.41e-08 2.88e-06