Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_185350.1 Data


Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032990.1 0 -1.53 -9.49 -13.75 -8.21
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_167350.1 0 -0.80 -1.92 -3.39 -6.34
Smp_179460.1 0 -2.52 -7.07 -4.09 -3.97
Smp_181730.1 0 -0.37 -1.35 -5.07 -5.51
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_186130.2 0 -1.40 -3.75 -10.97 -9.77
Smp_188600.1 0 -1.05 -3.54 -4.81 -5.04
Smp_190190.1 0 -1.71 -0.81 -9.39 -9.39
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_201320.1 0 -1.71 -5.69 -7.19 -7.19
Smp_201750.1 0 -0.56 -4.79 -7.34 -11.47
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_203980.1 0 -0.92 -4.57 -6.89 -8.25
Smp_205870.1 0 -0.54 -2.25 -7.61 -12.32
Smp_206090.1 0 -0.17 -0.84 -12.35 -12.13
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185350.1 Smp_032990.1 0.96 1.12e-08 2.46e-06
Smp_077690.1 Smp_185350.1 0.90 3.40e-06 1.00e-04
Smp_116760.1 Smp_185350.1 0.96 2.79e-09 9.89e-07
Smp_167350.1 Smp_185350.1 0.91 1.98e-06 8.63e-05
Smp_185350.1 Smp_179460.1 0.92 8.66e-07 4.82e-05
Smp_181730.1 Smp_185350.1 0.90 3.37e-06 1.00e-04
Smp_183020.1 Smp_185350.1 0.91 2.21e-06 9.34e-05
Smp_185350.1 Smp_183020.6 0.91 2.21e-06 9.34e-05
Smp_186130.2 Smp_185350.1 0.96 3.71e-09 1.19e-06
Smp_188600.1 Smp_185350.1 0.95 5.38e-08 7.10e-06
Smp_190190.1 Smp_185350.1 0.90 4.45e-06 1.00e-04
Smp_185350.1 Smp_199840.1 0.93 2.50e-07 2.03e-05
Smp_201320.1 Smp_185350.1 0.90 3.00e-06 1.00e-04
Smp_201750.1 Smp_185350.1 0.92 5.51e-07 3.51e-05
Smp_202140.1 Smp_185350.1 0.90 2.67e-06 1.00e-04
Smp_185350.1 Smp_203980.1 0.97 1.16e-09 5.60e-07
Smp_205870.1 Smp_185350.1 0.94 6.85e-08 8.36e-06
Smp_206090.1 Smp_185350.1 0.93 3.76e-07 2.70e-05
Smp_206130.1 Smp_185350.1 0.94 7.41e-08 8.82e-06
Smp_206150.1 Smp_185350.1 0.93 2.80e-07 2.20e-05