Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_185220.1 Data

Correlation between Smp_185220.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_185220.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185220.1 SmLINC02255-IBu 0.84 7.76e-05 1.10e-03
Smp_185220.1 SmLINC02630-IBu 0.81 1.00e-04 2.20e-03
Smp_185220.1 SmLINC02657-IBu 0.81 1.00e-04 2.20e-03
Smp_185220.1 SmLINC05989-IBu 0.91 1.75e-06 7.64e-05
Smp_185220.1 SmLINC06128-IBu 0.94 7.79e-08 8.64e-06
Smp_185220.1 SmLINC06535-IBu 0.81 2.00e-04 2.40e-03
Smp_185220.1 SmLINC06903-IBu 0.83 1.00e-04 1.50e-03

Correlation between Smp_185220.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_034940.3 0 -1.53 -6.25 -9.66 -13.38
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_083180.1 0 -1.30 -10.31 -10.31 -10.31
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_185220.1 0 -1.31 -3.59 -4.11 -4.96
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185220.1 Smp_018880.1 0.95 2.71e-08 4.46e-06
Smp_034940.3 Smp_185220.1 0.93 3.64e-07 2.63e-05
Smp_185220.1 Smp_035090.2 0.90 4.86e-06 1.00e-04
Smp_185220.1 Smp_051230.4 0.94 1.80e-07 1.62e-05
Smp_185220.1 Smp_083180.1 0.92 8.26e-07 4.66e-05
Smp_185220.1 Smp_085290.3 0.92 7.79e-07 4.47e-05
Smp_185220.1 Smp_102670.1 0.91 1.45e-06 6.95e-05
Smp_185220.1 Smp_106390.1 0.94 9.31e-08 1.03e-05
Smp_185220.1 Smp_134410.1 0.95 4.26e-08 6.06e-06
Smp_185220.1 Smp_145810.2 0.94 8.66e-08 9.81e-06
Smp_185220.1 Smp_149670.1 0.94 1.06e-07 1.13e-05
Smp_150690.2 Smp_185220.1 0.91 1.78e-06 8.03e-05
Smp_185220.1 Smp_168080.2 0.94 1.88e-07 1.67e-05
Smp_185220.1 Smp_185360.1 0.92 5.65e-07 3.58e-05
Smp_185220.1 Smp_188900.1 0.95 3.32e-08 5.12e-06
Smp_185220.1 Smp_195070.1 0.96 9.59e-09 2.22e-06