Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_185080.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_185080.1 0 -0.58 -3.13 -5.88 -3.60

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185080.1 SmLINC00037-IBu 0.91 2.32e-06 9.34e-05
Smp_185080.1 SmLINC00133-IBu 0.91 2.04e-06 8.52e-05
Smp_185080.1 SmLINC00282-IBu 0.94 1.27e-07 1.21e-05
Smp_185080.1 SmLINC00294-IBu 0.83 1.00e-04 1.40e-03
Smp_185080.1 SmLINC00376-IBu -0.82 1.00e-04 2.00e-03
Smp_185080.1 SmLINC00784-IBu 0.80 2.00e-04 3.10e-03
Smp_185080.1 SmLINC01462-IBu 0.84 7.07e-05 1.00e-03
Smp_185080.1 SmLINC01486-IBu 0.89 6.05e-06 1.00e-04
Smp_185080.1 SmLINC01637-IBu 0.91 1.35e-06 6.37e-05
Smp_185080.1 SmLINC02255-IBu 0.92 7.46e-07 4.17e-05
Smp_185080.1 SmLINC02630-IBu 0.89 6.90e-06 2.00e-04
Smp_185080.1 SmLINC02657-IBu 0.92 1.17e-06 5.75e-05
Smp_185080.1 SmLINC03769-IBu 0.83 8.94e-05 1.30e-03
Smp_185080.1 SmLINC03848-IBu 0.91 1.64e-06 7.30e-05
Smp_185080.1 SmLINC03930-IBu 0.94 6.25e-08 7.43e-06
Smp_185080.1 SmLINC04075-IBu 0.85 5.96e-05 9.00e-04
Smp_185080.1 SmLINC04366-IBu 0.88 1.34e-05 3.00e-04
Smp_185080.1 SmLINC05284-IBu 0.92 1.07e-06 5.38e-05
Smp_185080.1 SmLINC05716-IBu 0.91 1.65e-06 7.32e-05
Smp_185080.1 SmLINC05720-IBu 0.86 3.34e-05 6.00e-04
Smp_185080.1 SmLINC05990-IBu -0.82 1.00e-04 2.00e-03
Smp_185080.1 SmLINC06535-IBu 0.96 1.15e-08 2.34e-06
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_157140.1 0 9.07 10.07 10.84 11.76
Smp_160230.1 0 -0.76 -3.24 -8.69 -10.72
Smp_185080.1 0 -0.58 -3.13 -5.88 -3.60
Smp_205450.1 0 0.54 -1.87 -11.14 -11.14

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_185080.1 Smp_032970.1 0.92 6.93e-07 4.12e-05
Smp_185080.1 Smp_035200.3 0.91 1.95e-06 8.56e-05
Smp_185080.1 Smp_036270.4 0.97 1.44e-09 6.45e-07
Smp_185080.1 Smp_111640.1 0.91 1.89e-06 8.36e-05
Smp_185080.1 Smp_157140.1 -0.91 1.40e-06 6.79e-05
Smp_185080.1 Smp_160230.1 0.93 1.99e-07 1.73e-05
Smp_185080.1 Smp_205450.1 0.90 3.01e-06 1.00e-04