Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_184760.1 Data

Correlation between Smp_184760.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_184760.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_184760.1 SmLINC00282-IBu 0.81 2.00e-04 2.50e-03
Smp_184760.1 SmLINC00784-IBu 0.93 2.60e-07 1.99e-05
Smp_184760.1 SmLINC02630-IBu 0.81 2.00e-04 2.70e-03
Smp_184760.1 SmLINC03848-IBu 0.87 1.72e-05 3.00e-04
Smp_184760.1 SmLINC03930-IBu 0.82 1.00e-04 1.80e-03
Smp_184760.1 SmLINC04366-IBu 0.85 5.75e-05 9.00e-04
Smp_184760.1 SmLINC05284-IBu 0.81 2.00e-04 2.60e-03
Smp_184760.1 SmLINC05716-IBu 0.82 1.00e-04 1.90e-03
Smp_184760.1 SmLINC05720-IBu 0.89 5.48e-06 1.00e-04

Correlation between Smp_184760.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00367-IBu 0 -0.32 -2.33 -6.04 -11.31
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01088-IBu 0 0.12 -2.15 -3.73 -3.81
SmLINC02317-IBu 0 -0.23 -5.11 -7.32 -7.30
SmLINC03674-IBu 0 -0.30 -3.96 -6.64 -2.88
SmLINC03964-IBu 0 -0.32 -2.57 -5.22 -5.79
SmLINC04606-IBu 0 -0.48 -2.83 -5.66 -8.00
SmLINC05663-IBu 0 0.72 -2.30 -7.21 -6.28
SmLINC06111-IBu 0 -0.47 -2.79 -12.47 -8.65
SmLINC06212-IBu 0 -0.75 -3.47 -10.55 -10.55
SmLINC06257-IBu 0 -0.36 -2.04 -6.75 -8.37
SmLINC06367-IBu 0 -0.17 -2.22 -3.46 -5.10
Smp_022730.1 0 -0.73 -1.37 -5.39 -4.86
Smp_072430.1 0 -0.24 -3.63 -7.73 -4.03
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_083340.4 0 -0.76 -5.02 -9.88 -12.95
Smp_100600.1 0 -0.51 -2.27 -6.43 -6.43
Smp_107810.1 0 0.34 -1.79 -7.61 -7.61
Smp_107860.1 0 0.34 -1.79 -7.61 -7.61
Smp_108390.1 0 -0.09 -2.06 -5.55 -4.63
Smp_110390.1 0 0.34 -1.79 -7.61 -7.61
Smp_119130.1 0 -0.11 -2.24 -9.20 -4.94
Smp_150450.1 0 -0.77 -4.60 -4.36 -4.30
Smp_165510.1 0 0.09 -3.88 -8.04 -8.63
Smp_178890.1 0 0.36 -2.67 -7.83 -7.83
Smp_179300.3 0 -0.68 -3.23 -9.39 -8.12
Smp_182030.1 0 -0.35 -4.07 -9.56 -9.56
Smp_183080.1 0 1.61 -2.18 -8.70 -8.70
Smp_183570.1 0 0.44 -6.32 -6.32 -6.32
Smp_184400.1 0 0.15 -4.14 -8.88 -8.88
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_185560.1 0 0.07 -2.33 -8.32 -8.32
Smp_200510.1 0 -0.08 -3.12 -8.78 -8.58
Smp_203100.1 0 0.53 -3.27 -9.59 -11.66
Smp_203380.1 0 0.51 -4.20 -12.37 -9.65

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_184760.1 SmLINC00367-IBu 0.94 8.63e-08 9.79e-06
Smp_184760.1 SmLINC00784-IBu 0.93 2.60e-07 2.09e-05
Smp_184760.1 SmLINC01088-IBu 0.90 3.79e-06 1.00e-04
Smp_184760.1 SmLINC02317-IBu 0.93 2.04e-07 1.77e-05
Smp_184760.1 SmLINC03674-IBu 0.92 5.27e-07 3.40e-05
Smp_184760.1 SmLINC03964-IBu 0.92 8.33e-07 4.69e-05
Smp_184760.1 SmLINC04606-IBu 0.96 1.45e-08 2.93e-06
Smp_184760.1 SmLINC05663-IBu 0.91 2.29e-06 9.58e-05
Smp_184760.1 SmLINC06111-IBu 0.90 4.60e-06 1.00e-04
Smp_184760.1 SmLINC06212-IBu 0.91 2.09e-06 8.97e-05
Smp_184760.1 SmLINC06257-IBu 0.90 4.25e-06 1.00e-04
Smp_184760.1 SmLINC06367-IBu 0.91 1.44e-06 6.92e-05
Smp_184760.1 Smp_022730.1 0.91 1.32e-06 6.51e-05
Smp_184760.1 Smp_072430.1 0.94 1.08e-07 1.14e-05
Smp_184760.1 Smp_077690.1 0.91 2.29e-06 9.58e-05
Smp_184760.1 Smp_083340.4 0.95 2.22e-08 3.90e-06
Smp_184760.1 Smp_100600.1 0.96 1.13e-08 2.48e-06
Smp_184760.1 Smp_107810.1 0.93 2.83e-07 2.21e-05
Smp_184760.1 Smp_107860.1 0.93 2.83e-07 2.21e-05
Smp_184760.1 Smp_108390.1 0.90 3.08e-06 1.00e-04
Smp_184760.1 Smp_110390.1 0.93 2.83e-07 2.21e-05
Smp_184760.1 Smp_119130.1 0.91 1.25e-06 6.26e-05
Smp_184760.1 Smp_150450.1 0.90 2.55e-06 1.00e-04
Smp_184760.1 Smp_165510.1 0.97 6.72e-10 3.94e-07
Smp_184760.1 Smp_178890.1 0.94 7.00e-08 8.48e-06
Smp_184760.1 Smp_179300.3 0.94 6.61e-08 8.16e-06
Smp_184760.1 Smp_182030.1 0.91 2.16e-06 9.20e-05
Smp_184760.1 Smp_183080.1 0.90 3.74e-06 1.00e-04
Smp_184760.1 Smp_183570.1 0.93 2.82e-07 2.20e-05
Smp_184760.1 Smp_184400.1 0.92 5.91e-07 3.69e-05
Smp_184760.1 Smp_185560.1 0.93 4.11e-07 2.87e-05
Smp_184760.1 Smp_200510.1 0.93 1.97e-07 1.72e-05
Smp_184760.1 Smp_203100.1 0.92 7.73e-07 4.45e-05
Smp_184760.1 Smp_203380.1 0.90 3.09e-06 1.00e-04