Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_184720.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC04947-IBu 0 -5.01 1.51 -1.96 -5.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_184720.1 0 -1.57 1.46 -4.31 -4.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_184720.1 SmLINC00372-IBu 0.87 2.29e-05 4.00e-04
Smp_184720.1 SmLINC04947-IBu 0.98 1.31e-10 1.26e-07
Smp_184720.1 SmLINC05559-IBu 0.91 2.31e-06 9.31e-05
Smp_184720.1 SmLINC06836-IBu 0.87 1.85e-05 4.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_184720.1 0 -1.57 1.46 -4.31 -4.31

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_184720.1 Smp_159070.3 0.9 4.30e-06 1.00e-04