Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_184280.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00171-IBu 0 -0.59 -5.27 3.90 3.47
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00477-IBu 0 -1.14 -0.46 4.37 3.06
SmLINC00484-IBu 0 -0.02 2.64 6.82 5.24
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01066-IBu 0 0.76 1.52 6.33 5.39
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01433-IBu 0 5.33 4.84 12.27 11.18
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01822-IBu 0 0.00 0.00 7.51 5.59
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03542-IBu 0 3.10 -2.22 9.17 7.75
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04759-IBu 0 5.51 6.18 8.81 7.80
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06538-IBu 0 0.43 1.18 7.23 4.57
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_184280.1 0 -1.39 -1.26 5.35 5.21

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_184280.1 SmLINC00171-IBu 0.81 1.00e-04 2.30e-03
Smp_184280.1 SmLINC00369-IBu 0.85 3.96e-05 7.00e-04
Smp_184280.1 SmLINC00477-IBu 0.85 4.76e-05 8.00e-04
Smp_184280.1 SmLINC00484-IBu 0.85 5.20e-05 8.00e-04
Smp_184280.1 SmLINC00633-IBu 0.89 5.69e-06 1.00e-04
Smp_184280.1 SmLINC01066-IBu 0.80 2.00e-04 2.90e-03
Smp_184280.1 SmLINC01122-IBu 0.81 1.00e-04 2.20e-03
Smp_184280.1 SmLINC01432-IBu 0.88 9.47e-06 2.00e-04
Smp_184280.1 SmLINC01433-IBu 0.88 9.59e-06 2.00e-04
Smp_184280.1 SmLINC01435-IBu 0.89 7.94e-06 2.00e-04
Smp_184280.1 SmLINC01538-IBu 0.80 2.00e-04 3.00e-03
Smp_184280.1 SmLINC01569-IBu 0.83 9.89e-05 1.40e-03
Smp_184280.1 SmLINC01822-IBu 0.83 1.00e-04 1.50e-03
Smp_184280.1 SmLINC02084-IBu 0.82 1.00e-04 2.10e-03
Smp_184280.1 SmLINC03108-IBu 0.82 1.00e-04 1.70e-03
Smp_184280.1 SmLINC03309-IBu 0.82 1.00e-04 2.10e-03
Smp_184280.1 SmLINC03542-IBu 0.89 4.94e-06 1.00e-04
Smp_184280.1 SmLINC03693-IBu 0.87 1.62e-05 3.00e-04
Smp_184280.1 SmLINC04421-IBu 0.84 7.32e-05 1.10e-03
Smp_184280.1 SmLINC04478-IBu 0.84 6.78e-05 1.00e-03
Smp_184280.1 SmLINC04521-IBu 0.90 4.24e-06 1.00e-04
Smp_184280.1 SmLINC04759-IBu 0.85 4.84e-05 8.00e-04
Smp_184280.1 SmLINC05147-IBu 0.90 3.59e-06 1.00e-04
Smp_184280.1 SmLINC06145-IBu 0.89 7.25e-06 2.00e-04
Smp_184280.1 SmLINC06221-IBu 0.85 4.25e-05 7.00e-04
Smp_184280.1 SmLINC06538-IBu 0.85 4.84e-05 8.00e-04
Smp_184280.1 SmLINC06543-IBu 0.88 8.83e-06 2.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_081920.1 0 -1.83 3.45 12.11 11.06
Smp_123200.1 0 0.00 0.00 12.38 11.42
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_141680.1 0 1.93 6.74 10.30 9.72
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_166860.1 0 0.00 0.00 10.18 10.19
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_177580.1 0 3.28 2.12 11.83 11.79
Smp_184280.1 0 -1.39 -1.26 5.35 5.21
Smp_203090.1 0 0.00 0.00 10.35 10.67

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_081920.1 Smp_184280.1 0.91 1.48e-06 7.05e-05
Smp_123200.1 Smp_184280.1 0.90 3.75e-06 1.00e-04
Smp_184280.1 Smp_123550.1 0.96 3.37e-09 1.11e-06
Smp_141680.1 Smp_184280.1 0.90 3.93e-06 1.00e-04
Smp_151120.1 Smp_184280.1 0.92 5.60e-07 3.55e-05
Smp_156930.1 Smp_184280.1 0.91 1.67e-06 7.68e-05
Smp_166860.1 Smp_184280.1 0.97 6.97e-10 4.04e-07
Smp_184280.1 Smp_172960.1 0.90 4.43e-06 1.00e-04
Smp_177580.1 Smp_184280.1 0.96 2.78e-09 9.85e-07
Smp_203090.1 Smp_184280.1 0.90 4.41e-06 1.00e-04