Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_184180.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06489-IBu 0 0.79 0.67 -4.22 -4.27
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_184180.1 SmLINC00001-IBu -0.80 2.00e-04 2.90e-03
Smp_184180.1 SmLINC00004-IBu -0.83 9.48e-05 1.30e-03
Smp_184180.1 SmLINC00294-IBu 0.84 6.48e-05 1.00e-03
Smp_184180.1 SmLINC00369-IBu -0.83 1.00e-04 1.40e-03
Smp_184180.1 SmLINC00376-IBu -0.83 1.00e-04 1.50e-03
Smp_184180.1 SmLINC00525-IBu -0.86 2.61e-05 5.00e-04
Smp_184180.1 SmLINC01084-IBu -0.88 1.26e-05 3.00e-04
Smp_184180.1 SmLINC01122-IBu -0.80 2.00e-04 2.90e-03
Smp_184180.1 SmLINC01431-IBu -0.85 4.04e-05 7.00e-04
Smp_184180.1 SmLINC01637-IBu 0.81 2.00e-04 2.50e-03
Smp_184180.1 SmLINC02026-IBu 0.83 1.00e-04 1.50e-03
Smp_184180.1 SmLINC02084-IBu -0.84 8.25e-05 1.20e-03
Smp_184180.1 SmLINC02394-IBu -0.80 3.00e-04 3.30e-03
Smp_184180.1 SmLINC02546-IBu -0.80 2.00e-04 2.80e-03
Smp_184180.1 SmLINC04421-IBu -0.85 4.35e-05 7.00e-04
Smp_184180.1 SmLINC04423-IBu -0.81 2.00e-04 2.60e-03
Smp_184180.1 SmLINC04478-IBu -0.81 2.00e-04 2.60e-03
Smp_184180.1 SmLINC04521-IBu -0.81 2.00e-04 2.40e-03
Smp_184180.1 SmLINC05289-IBu -0.81 2.00e-04 2.40e-03
Smp_184180.1 SmLINC05604-IBu -0.82 1.00e-04 1.80e-03
Smp_184180.1 SmLINC06024-IBu -0.90 4.21e-06 1.00e-04
Smp_184180.1 SmLINC06489-IBu 0.82 1.00e-04 1.70e-03
Smp_184180.1 SmLINC06490-IBu 0.90 3.21e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02987-IBu 0 0.03 -0.66 -5.30 -5.63
SmLINC04259-IBu 0 0.67 0.50 -4.21 -5.86
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC07010-IBu 0 0.22 -0.04 -9.27 -12.84
SmLINC07011-IBu 0 0.12 -0.23 -13.69 -11.81
Smp_005260.2 0 -0.36 -1.30 -5.79 -5.89
Smp_022640.1 0 -0.91 -1.49 -5.58 -3.97
Smp_026820.1 0 -3.23 -3.72 0.76 1.23
Smp_032580.1 0 -0.52 -0.98 -8.52 -6.88
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_053830.1 0 -0.20 -1.48 -4.87 -3.36
Smp_062720.1 0 -0.73 -0.47 -6.25 -5.83
Smp_068920.3 0 -0.20 -1.33 -4.27 -3.53
Smp_071640.1 0 -0.48 -1.03 -6.28 -5.01
Smp_086600.1 0 -0.12 -0.81 -6.58 -10.32
Smp_090930.5 0 0.88 1.41 -11.45 -5.15
Smp_110280.1 0 -0.83 -0.25 -7.88 -7.44
Smp_111710.1 0 0.65 -0.08 -5.04 -9.36
Smp_122830.1 0 -0.22 -0.24 -3.98 -3.99
Smp_126850.1 0 -0.32 -0.59 -8.40 -9.05
Smp_132160.1 0 -0.52 -0.30 -3.96 -5.23
Smp_137330.1 0 -0.19 -0.00 -4.27 -3.94
Smp_141020.1 0 -0.45 -0.94 -9.20 -5.95
Smp_177900.1 0 -0.46 -0.44 -3.24 -4.66
Smp_181330.1 0 -0.70 -0.19 -8.45 -6.28
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99
Smp_201240.1 0 0.33 1.35 -3.56 -3.77
Smp_202340.1 0 0.90 1.72 -6.17 -6.91
Smp_204940.1 0 0.14 1.05 -5.47 -5.25
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_184180.1 SmLINC02987-IBu 0.90 3.35e-06 1.00e-04
Smp_184180.1 SmLINC04259-IBu 0.93 4.31e-07 2.96e-05
Smp_184180.1 SmLINC06024-IBu -0.90 4.21e-06 1.00e-04
Smp_184180.1 SmLINC06490-IBu 0.90 3.21e-06 1.00e-04
Smp_184180.1 SmLINC07010-IBu 0.91 1.64e-06 7.56e-05
Smp_184180.1 SmLINC07011-IBu 0.90 4.62e-06 1.00e-04
Smp_005260.2 Smp_184180.1 0.91 1.31e-06 6.48e-05
Smp_022640.1 Smp_184180.1 0.92 1.00e-06 5.34e-05
Smp_026820.1 Smp_184180.1 -0.92 1.06e-06 5.59e-05
Smp_032580.1 Smp_184180.1 0.94 1.80e-07 1.62e-05
Smp_038870.2 Smp_184180.1 -0.90 4.21e-06 1.00e-04
Smp_184180.1 Smp_053830.1 0.97 3.10e-10 2.41e-07
Smp_062720.1 Smp_184180.1 0.94 1.82e-07 1.63e-05
Smp_068920.3 Smp_184180.1 0.93 4.21e-07 2.91e-05
Smp_071640.1 Smp_184180.1 0.90 2.83e-06 1.00e-04
Smp_086600.1 Smp_184180.1 0.94 1.03e-07 1.11e-05
Smp_090930.5 Smp_184180.1 0.90 3.63e-06 1.00e-04
Smp_110280.1 Smp_184180.1 0.92 1.13e-06 5.84e-05
Smp_111710.1 Smp_184180.1 0.90 2.52e-06 1.00e-04
Smp_122830.1 Smp_184180.1 0.94 9.65e-08 1.05e-05
Smp_126850.1 Smp_184180.1 0.92 6.30e-07 3.86e-05
Smp_132160.1 Smp_184180.1 0.91 2.48e-06 1.00e-04
Smp_137330.1 Smp_184180.1 0.91 1.75e-06 7.93e-05
Smp_141020.1 Smp_184180.1 0.95 2.98e-08 4.75e-06
Smp_177900.1 Smp_184180.1 0.94 9.52e-08 1.04e-05
Smp_181330.1 Smp_184180.1 0.90 4.68e-06 1.00e-04
Smp_184180.1 Smp_201240.1 0.95 2.65e-08 4.39e-06
Smp_202340.1 Smp_184180.1 0.93 3.02e-07 2.32e-05
Smp_204940.1 Smp_184180.1 0.90 2.95e-06 1.00e-04
Smp_212510.1 Smp_184180.1 0.96 3.69e-09 1.18e-06