Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_183870.1 Data

Correlation between Smp_183870.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_183870.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_183870.1 0 -0.34 -1.88 -9.35 -11.39

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_183870.1 SmLINC00294-IBu 0.82 1.00e-04 2.00e-03
Smp_183870.1 SmLINC00525-IBu -0.81 2.00e-04 2.50e-03
Smp_183870.1 SmLINC04421-IBu -0.80 2.00e-04 3.10e-03
Smp_183870.1 SmLINC06490-IBu 0.87 2.03e-05 4.00e-04

Correlation between Smp_183870.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC05975-IBu 0 0.17 -0.60 -2.76 -5.49
Smp_038560.3 0 -0.33 -1.17 -6.92 -6.48
Smp_120330.1 0 -0.78 -1.75 -6.70 -8.97
Smp_159730.2 0 -0.26 -0.69 -4.33 -4.68
Smp_162850.1 0 -0.18 -0.96 -6.10 -7.13
Smp_183870.1 0 -0.34 -1.88 -9.35 -11.39
Smp_205470.1 0 0.16 -0.98 -10.60 -7.47

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_183870.1 SmLINC05975-IBu 0.90 3.04e-06 1.00e-04
Smp_183870.1 Smp_038560.3 0.91 2.25e-06 9.46e-05
Smp_183870.1 Smp_120330.1 0.93 4.99e-07 3.28e-05
Smp_159730.2 Smp_183870.1 0.92 1.11e-06 5.75e-05
Smp_183870.1 Smp_162850.1 0.91 1.65e-06 7.61e-05
Smp_205470.1 Smp_183870.1 0.93 3.58e-07 2.60e-05