Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_183790.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
Smp_183790.1 0 1.84 -0.43 -2.43 -5.81

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_183790.1 SmLINC00784-IBu 0.91 2.20e-06 8.99e-05
Smp_183790.1 SmLINC03056-IBu 0.80 2.00e-04 3.00e-03
Smp_183790.1 SmLINC03848-IBu 0.81 1.00e-04 2.10e-03
Smp_183790.1 SmLINC04106-IBu 0.83 9.88e-05 1.40e-03
Smp_183790.1 SmLINC04366-IBu 0.83 9.94e-05 1.40e-03
Smp_183790.1 SmLINC05720-IBu 0.85 4.22e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_183790.1 0 1.84 -0.43 -2.43 -5.81
Smp_203100.1 0 0.53 -3.27 -9.59 -11.66
Smp_203380.1 0 0.51 -4.20 -12.37 -9.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_183790.1 Smp_203100.1 0.96 3.95e-09 1.23e-06
Smp_183790.1 Smp_203380.1 0.96 2.83e-09 9.97e-07