Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_183570.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC04106-IBu 0 1.60 -0.86 -5.26 -10.78
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
Smp_183570.1 0 0.44 -6.32 -6.32 -6.32

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_183570.1 SmLINC00037-IBu 0.80 2.00e-04 2.80e-03
Smp_183570.1 SmLINC00282-IBu 0.83 8.99e-05 1.30e-03
Smp_183570.1 SmLINC00784-IBu 0.96 1.19e-08 2.40e-06
Smp_183570.1 SmLINC01637-IBu 0.82 1.00e-04 2.00e-03
Smp_183570.1 SmLINC03056-IBu 0.84 6.92e-05 1.00e-03
Smp_183570.1 SmLINC03848-IBu 0.91 1.31e-06 6.23e-05
Smp_183570.1 SmLINC04106-IBu 0.85 4.76e-05 8.00e-04
Smp_183570.1 SmLINC04366-IBu 0.86 2.85e-05 5.00e-04
Smp_183570.1 SmLINC05284-IBu 0.86 3.60e-05 6.00e-04
Smp_183570.1 SmLINC05716-IBu 0.82 1.00e-04 2.00e-03
Smp_183570.1 SmLINC05720-IBu 0.89 5.98e-06 1.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_032320.1 0 1.14 -10.97 -10.97 -10.97
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_183570.1 0 0.44 -6.32 -6.32 -6.32
Smp_184760.1 0 -0.25 -4.83 -11.75 -14.03
Smp_203100.1 0 0.53 -3.27 -9.59 -11.66
Smp_203380.1 0 0.51 -4.20 -12.37 -9.65

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_183570.1 Smp_032320.1 0.90 3.73e-06 1.00e-04
Smp_183570.1 Smp_112090.1 0.91 1.41e-06 6.82e-05
Smp_184760.1 Smp_183570.1 0.93 2.82e-07 2.20e-05
Smp_203100.1 Smp_183570.1 0.92 9.07e-07 4.98e-05
Smp_183570.1 Smp_203380.1 0.93 1.95e-07 1.71e-05