Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_183020.6 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_183020.6 SmLINC02678-IBu 0.85 4.75e-05 8.00e-04
Smp_183020.6 SmLINC02888-IBu 0.80 2.00e-04 2.80e-03
Smp_183020.6 SmLINC06892-IBu 0.80 2.00e-04 2.90e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_037690.1 0 -2.59 -1.18 -3.31 -6.04
Smp_084400.4 0 -2.64 -4.06 -5.30 -7.16
Smp_116760.1 0 -1.93 -4.95 -12.63 -10.20
Smp_179460.1 0 -2.52 -7.07 -4.09 -3.97
Smp_183020.1 0 -2.31 -1.58 -15.79 -15.79
Smp_183020.6 0 -2.31 -1.58 -15.79 -15.79
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_186610.1 0 -3.09 -6.92 -6.26 -7.07
Smp_190190.1 0 -1.71 -0.81 -9.39 -9.39
Smp_190320.1 0 -2.26 -2.78 -8.01 -9.33
Smp_199840.1 0 -1.81 -3.67 -4.48 -5.82
Smp_200280.1 0 -1.49 -0.63 -7.84 -7.50
Smp_201320.1 0 -1.71 -5.69 -7.19 -7.19
Smp_202540.1 0 -2.41 -1.38 -6.47 -8.50
Smp_205900.1 0 -3.56 -6.12 -5.80 -6.36
Smp_206130.1 0 -1.65 -4.00 -5.51 -5.79
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_037690.1 Smp_183020.6 0.92 8.97e-07 4.94e-05
Smp_084400.4 Smp_183020.6 0.94 1.86e-07 1.65e-05
Smp_116760.1 Smp_183020.6 0.92 5.71e-07 3.60e-05
Smp_183020.6 Smp_179460.1 0.92 8.78e-07 4.87e-05
Smp_183020.1 Smp_183020.6 1.00 0.00e+00 0.00e+00
Smp_185350.1 Smp_183020.6 0.91 2.21e-06 9.34e-05
Smp_183020.6 Smp_186610.1 0.91 2.21e-06 9.33e-05
Smp_190190.1 Smp_183020.6 0.95 5.35e-08 7.07e-06
Smp_190320.1 Smp_183020.6 0.93 1.96e-07 1.71e-05
Smp_183020.6 Smp_199840.1 0.92 6.06e-07 3.76e-05
Smp_183020.6 Smp_200280.1 0.95 2.27e-08 3.95e-06
Smp_201320.1 Smp_183020.6 0.93 4.67e-07 3.13e-05
Smp_202540.1 Smp_183020.6 0.94 6.96e-08 8.45e-06
Smp_205900.1 Smp_183020.6 0.90 3.42e-06 1.00e-04
Smp_206130.1 Smp_183020.6 0.92 7.41e-07 4.32e-05
Smp_206150.1 Smp_183020.6 0.91 1.91e-06 8.42e-05