Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_183020.13 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
Smp_183020.13 0 -3.91 -2.91 -8.65 -5.43

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_183020.13 SmLINC06890-IBu 0.91 1.81e-06 7.85e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_007270.2 0 -4.80 -3.78 -12.58 -12.58
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_183020.13 0 -3.91 -2.91 -8.65 -5.43
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_183020.13 Smp_007270.2 0.92 8.09e-07 4.59e-05
Smp_043670.2 Smp_183020.13 0.96 3.47e-09 1.13e-06
Smp_183020.13 Smp_096020.1 0.94 1.79e-07 1.61e-05
Smp_182890.1 Smp_183020.13 0.95 5.14e-08 6.88e-06
Smp_183020.13 Smp_186130.1 0.91 1.78e-06 8.02e-05