Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_182910.1 Data

Correlation between Smp_182910.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_182910.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC05284-IBu 0 -0.31 -1.54 -3.79 -5.97
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC05990-IBu 0 9.67 10.42 11.79 11.49
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_182910.1 0 -1.24 -2.03 -6.37 -6.64

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_182910.1 SmLINC00282-IBu 0.81 2.00e-04 2.60e-03
Smp_182910.1 SmLINC00376-IBu -0.82 1.00e-04 1.90e-03
Smp_182910.1 SmLINC02255-IBu 0.96 1.23e-08 2.45e-06
Smp_182910.1 SmLINC02630-IBu 0.94 1.14e-07 1.12e-05
Smp_182910.1 SmLINC02657-IBu 0.92 1.09e-06 5.47e-05
Smp_182910.1 SmLINC03769-IBu 0.87 1.65e-05 3.00e-04
Smp_182910.1 SmLINC03848-IBu 0.81 2.00e-04 2.60e-03
Smp_182910.1 SmLINC03930-IBu 0.81 2.00e-04 2.60e-03
Smp_182910.1 SmLINC04421-IBu -0.81 1.00e-04 2.20e-03
Smp_182910.1 SmLINC05284-IBu 0.89 6.17e-06 1.00e-04
Smp_182910.1 SmLINC05989-IBu 0.91 1.34e-06 6.35e-05
Smp_182910.1 SmLINC05990-IBu -0.80 2.00e-04 3.00e-03
Smp_182910.1 SmLINC06128-IBu 0.92 8.51e-07 4.57e-05
Smp_182910.1 SmLINC06535-IBu 0.87 1.63e-05 3.00e-04
Smp_182910.1 SmLINC06903-IBu 0.86 2.67e-05 5.00e-04

Correlation between Smp_182910.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_035090.2 0 -1.41 -2.69 -14.78 -14.86
Smp_055340.2 0 8.73 10.47 12.13 12.52
Smp_109240.1 0 -1.29 -3.52 -6.30 -10.11
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_182910.1 0 -1.24 -2.03 -6.37 -6.64

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_182910.1 Smp_035090.2 0.95 3.18e-08 4.97e-06
Smp_182910.1 Smp_055340.2 -0.92 9.92e-07 5.30e-05
Smp_109240.1 Smp_182910.1 0.91 2.01e-06 8.75e-05
Smp_134410.1 Smp_182910.1 0.91 1.35e-06 6.60e-05
Smp_149670.1 Smp_182910.1 0.94 1.60e-07 1.49e-05