Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_182890.1 Data

Correlation between Smp_182890.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_182890.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC03769-IBu 0 -1.05 -2.94 -6.89 -9.10
SmLINC04957-IBu 0 -2.62 -5.90 -3.92 -7.44
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_182890.1 SmLINC03769-IBu 0.81 2.00e-04 2.30e-03
Smp_182890.1 SmLINC04957-IBu 0.82 1.00e-04 1.70e-03
Smp_182890.1 SmLINC05989-IBu 0.81 1.00e-04 2.20e-03
Smp_182890.1 SmLINC06890-IBu 0.97 4.03e-10 2.62e-07
Smp_182890.1 SmLINC06903-IBu 0.91 1.80e-06 7.79e-05

Correlation between Smp_182890.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00093-IBu 0 -1.11 -3.33 -5.06 -7.16
SmLINC00298-IBu 0 -1.03 -2.32 -8.70 -8.70
SmLINC00568-IBu 0 -1.41 -4.15 -10.91 -11.85
SmLINC01675-IBu 0 -0.80 -1.29 -3.92 -5.49
SmLINC03574-IBu 0 -1.17 -2.16 -3.29 -5.27
SmLINC06890-IBu 0 -2.18 -6.70 -7.95 -9.08
SmLINC06903-IBu 0 -1.36 -4.25 -5.91 -3.41
Smp_005880.1 0 -1.71 -5.17 -4.43 -5.19
Smp_009310.4 0 -2.57 -4.50 -7.03 -8.00
Smp_009650.1 0 -2.22 -4.12 -4.36 -3.86
Smp_010000.1 0 -1.51 -3.27 -4.59 -5.75
Smp_014670.1 0 -1.55 -1.47 -4.90 -6.50
Smp_020550.1 0 -3.71 -4.02 -4.24 -5.10
Smp_028990.3 0 -1.23 -2.49 -10.45 -10.45
Smp_031000.1 0 -0.87 -10.51 -4.40 -10.51
Smp_034420.1 0 -1.76 -6.68 -4.27 -4.65
Smp_043670.2 0 -2.66 -2.86 -6.28 -13.62
Smp_061940.2 0 -3.16 -5.22 -11.34 -15.89
Smp_062720.2 0 -4.51 -3.77 -3.48 -4.71
Smp_076010.1 0 -2.03 -5.17 -3.81 -3.82
Smp_096020.1 0 -1.77 -8.42 -9.21 -10.05
Smp_111320.1 0 -0.97 -2.64 -4.04 -5.54
Smp_124340.1 0 -2.62 -4.99 -7.42 -3.75
Smp_129610.1 0 -3.45 -4.74 -3.50 -3.64
Smp_137520.1 0 -2.84 -5.66 -3.12 -4.79
Smp_140270.1 0 -2.83 -3.04 -4.31 -3.33
Smp_159600.1 0 -1.24 -3.76 -4.15 -5.60
Smp_177520.1 0 -1.05 -1.72 -9.36 -8.37
Smp_178630.1 0 -1.78 -5.50 -9.26 -9.26
Smp_182890.1 0 -1.33 -1.67 -9.07 -10.72
Smp_183020.13 0 -3.91 -2.91 -8.65 -5.43
Smp_186130.1 0 -2.11 -1.47 -10.40 -10.85
Smp_188880.1 0 -0.67 -5.57 -9.86 -9.86
Smp_192890.1 0 -1.10 -2.06 -12.83 -12.83
Smp_196050.1 0 -3.12 -5.35 -6.02 -6.99
Smp_198950.1 0 -0.98 -2.10 -5.57 -7.76
Smp_200320.1 0 -2.27 -7.31 -5.59 -8.81
Smp_205550.1 0 -1.80 -2.45 -3.88 -5.14
Smp_205860.1 0 -1.49 -2.52 -10.82 -15.29
Smp_206200.1 0 -1.74 -3.03 -14.12 -16.70
Smp_213910.1 0 -1.33 -3.68 -2.65 -4.53

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_182890.1 SmLINC00093-IBu 0.97 2.13e-09 8.30e-07
Smp_182890.1 SmLINC00298-IBu 0.90 2.91e-06 1.00e-04
Smp_182890.1 SmLINC00568-IBu 0.96 2.48e-09 9.15e-07
Smp_182890.1 SmLINC01675-IBu 0.92 1.12e-06 5.78e-05
Smp_182890.1 SmLINC03574-IBu 0.90 4.33e-06 1.00e-04
Smp_182890.1 SmLINC06890-IBu 0.97 4.03e-10 2.85e-07
Smp_182890.1 SmLINC06903-IBu 0.91 1.80e-06 8.07e-05
Smp_182890.1 Smp_005880.1 0.93 2.50e-07 2.03e-05
Smp_182890.1 Smp_009310.4 0.93 1.96e-07 1.72e-05
Smp_182890.1 Smp_009650.1 0.94 1.71e-07 1.56e-05
Smp_010000.1 Smp_182890.1 0.95 3.79e-08 5.60e-06
Smp_182890.1 Smp_014670.1 0.92 8.76e-07 4.86e-05
Smp_182890.1 Smp_020550.1 0.93 3.39e-07 2.51e-05
Smp_182890.1 Smp_028990.3 0.90 3.86e-06 1.00e-04
Smp_182890.1 Smp_031000.1 0.92 8.20e-07 4.64e-05
Smp_182890.1 Smp_034420.1 0.92 7.70e-07 4.44e-05
Smp_043670.2 Smp_182890.1 0.96 2.86e-09 1.00e-06
Smp_182890.1 Smp_061940.2 0.91 1.24e-06 6.23e-05
Smp_182890.1 Smp_062720.2 0.93 2.18e-07 1.85e-05
Smp_182890.1 Smp_076010.1 0.90 4.44e-06 1.00e-04
Smp_182890.1 Smp_096020.1 0.94 1.57e-07 1.47e-05
Smp_182890.1 Smp_111320.1 0.91 2.33e-06 9.71e-05
Smp_182890.1 Smp_124340.1 0.96 5.90e-09 1.61e-06
Smp_129610.1 Smp_182890.1 0.90 3.61e-06 1.00e-04
Smp_182890.1 Smp_137520.1 0.93 3.02e-07 2.31e-05
Smp_140270.1 Smp_182890.1 0.96 8.18e-09 2.00e-06
Smp_159600.1 Smp_182890.1 0.90 4.83e-06 1.00e-04
Smp_182890.1 Smp_177520.1 0.90 3.53e-06 1.00e-04
Smp_182890.1 Smp_178630.1 0.98 9.56e-12 2.67e-08
Smp_182890.1 Smp_183020.13 0.95 5.14e-08 6.88e-06
Smp_182890.1 Smp_186130.1 0.96 9.58e-09 2.21e-06
Smp_182890.1 Smp_188880.1 0.90 3.11e-06 1.00e-04
Smp_192890.1 Smp_182890.1 0.92 6.15e-07 3.79e-05
Smp_182890.1 Smp_196050.1 0.91 1.63e-06 7.55e-05
Smp_198950.1 Smp_182890.1 0.90 2.68e-06 1.00e-04
Smp_200320.1 Smp_182890.1 0.96 1.17e-08 2.54e-06
Smp_182890.1 Smp_205550.1 0.95 3.00e-08 4.77e-06
Smp_205860.1 Smp_182890.1 0.96 6.88e-09 1.78e-06
Smp_206200.1 Smp_182890.1 0.93 4.10e-07 2.86e-05
Smp_182890.1 Smp_213910.1 0.92 6.20e-07 3.82e-05