Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_182880.1 Data

Correlation between Smp_182880.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_182880.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02678-IBu 0 -3.18 -2.40 -3.22 -5.56
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_182880.1 0 -2.14 -2.31 -8.86 -9.55

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_182880.1 SmLINC00376-IBu -0.81 2.00e-04 2.60e-03
Smp_182880.1 SmLINC02255-IBu 0.83 1.00e-04 1.40e-03
Smp_182880.1 SmLINC02630-IBu 0.82 1.00e-04 1.70e-03
Smp_182880.1 SmLINC02678-IBu 0.88 1.00e-05 2.00e-04
Smp_182880.1 SmLINC05989-IBu 0.80 3.00e-04 3.10e-03
Smp_182880.1 SmLINC06128-IBu 0.83 1.00e-04 1.60e-03
Smp_182880.1 SmLINC06892-IBu 0.83 9.54e-05 1.30e-03

Correlation between Smp_182880.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_055220.2 0 -2.15 -2.21 -13.10 -13.10
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_154010.1 0 -1.98 -1.23 -7.66 -10.11
Smp_182880.1 0 -2.14 -2.31 -8.86 -9.55

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_182880.1 Smp_055220.2 0.94 8.89e-08 9.98e-06
Smp_182880.1 Smp_106390.1 0.91 1.97e-06 8.62e-05
Smp_182880.1 Smp_145810.2 0.90 2.70e-06 1.00e-04
Smp_182880.1 Smp_149670.1 0.93 2.50e-07 2.03e-05
Smp_182880.1 Smp_154010.1 0.90 3.69e-06 1.00e-04