Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_182770.1 Data

Correlation between Smp_182770.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_182770.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02630-IBu 0 -0.86 -1.66 -4.03 -11.09
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC02888-IBu 0 -1.98 -4.28 -4.50 -5.76
SmLINC05989-IBu 0 -1.59 -3.64 -6.05 -6.59
SmLINC06128-IBu 0 -1.91 -4.82 -10.42 -10.44
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
SmLINC06892-IBu 0 -2.10 -3.44 -12.52 -12.52
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_182770.1 SmLINC02255-IBu 0.88 1.29e-05 3.00e-04
Smp_182770.1 SmLINC02630-IBu 0.87 1.89e-05 4.00e-04
Smp_182770.1 SmLINC02657-IBu 0.85 5.54e-05 9.00e-04
Smp_182770.1 SmLINC02888-IBu 0.82 1.00e-04 1.80e-03
Smp_182770.1 SmLINC05989-IBu 0.87 1.65e-05 3.00e-04
Smp_182770.1 SmLINC06128-IBu 0.93 2.49e-07 1.93e-05
Smp_182770.1 SmLINC06535-IBu 0.86 3.78e-05 6.00e-04
Smp_182770.1 SmLINC06892-IBu 0.85 5.09e-05 8.00e-04

Correlation between Smp_182770.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_018880.1 0 -2.71 -8.49 -10.03 -6.16
Smp_051230.4 0 -1.10 -5.26 -12.47 -12.47
Smp_065580.1 0 -2.41 -12.61 -6.08 -5.45
Smp_067980.1 0 -0.94 -11.67 -4.00 -4.18
Smp_077690.1 0 -0.88 -2.98 -12.11 -12.11
Smp_085290.3 0 -2.11 -9.33 -13.07 -9.78
Smp_102670.1 0 -2.95 -8.79 -12.62 -12.62
Smp_106390.1 0 -2.35 -4.90 -10.78 -6.23
Smp_134410.1 0 -2.22 -3.88 -6.81 -12.78
Smp_140680.2 0 -1.06 -11.75 -8.40 -8.18
Smp_145810.2 0 -1.83 -3.47 -4.75 -10.08
Smp_149670.1 0 -1.98 -3.69 -10.45 -9.35
Smp_150690.2 0 -2.07 -12.58 -12.58 -12.58
Smp_168080.2 0 -1.01 -12.06 -12.06 -12.06
Smp_182770.1 0 -1.46 -4.03 -8.25 -8.62
Smp_184460.1 0 -2.24 -5.26 -13.63 -13.63
Smp_185360.1 0 -2.43 -5.85 -12.83 -12.83
Smp_188900.1 0 -1.35 -4.02 -11.76 -11.76
Smp_195070.1 0 -1.13 -9.73 -18.26 -16.31
Smp_202140.1 0 -1.27 -3.64 -10.44 -10.44
Smp_206150.1 0 -1.95 -4.12 -11.47 -11.47

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_018880.1 Smp_182770.1 0.92 5.60e-07 3.55e-05
Smp_051230.4 Smp_182770.1 0.90 3.32e-06 1.00e-04
Smp_065580.1 Smp_182770.1 0.90 3.16e-06 1.00e-04
Smp_067980.1 Smp_182770.1 0.91 1.99e-06 8.68e-05
Smp_077690.1 Smp_182770.1 0.91 1.47e-06 7.02e-05
Smp_085290.3 Smp_182770.1 0.93 4.17e-07 2.89e-05
Smp_102670.1 Smp_182770.1 0.91 2.44e-06 1.00e-04
Smp_106390.1 Smp_182770.1 0.95 4.29e-08 6.09e-06
Smp_134410.1 Smp_182770.1 0.91 1.28e-06 6.36e-05
Smp_140680.2 Smp_182770.1 0.90 3.30e-06 1.00e-04
Smp_145810.2 Smp_182770.1 0.95 2.24e-08 3.92e-06
Smp_149670.1 Smp_182770.1 0.95 2.08e-08 3.73e-06
Smp_150690.2 Smp_182770.1 0.93 3.80e-07 2.72e-05
Smp_168080.2 Smp_182770.1 0.94 1.87e-07 1.66e-05
Smp_184460.1 Smp_182770.1 0.94 1.34e-07 1.32e-05
Smp_185360.1 Smp_182770.1 0.94 6.30e-08 7.90e-06
Smp_188900.1 Smp_182770.1 0.98 5.98e-12 2.00e-08
Smp_195070.1 Smp_182770.1 0.96 1.27e-08 2.68e-06
Smp_202140.1 Smp_182770.1 0.94 1.89e-07 1.67e-05
Smp_206150.1 Smp_182770.1 0.93 2.24e-07 1.88e-05