Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_182090.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00037-IBu 0 0.38 -1.52 -5.66 -6.88
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00784-IBu 0 0.40 -3.11 -2.84 -3.25
SmLINC00893-IBu 0 1.08 -1.15 -3.04 -4.37
SmLINC01462-IBu 0 0.69 -0.90 -3.10 -4.62
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01637-IBu 0 0.25 -0.93 -6.06 -3.40
SmLINC03056-IBu 0 1.41 -1.34 -4.42 -9.40
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC04075-IBu 0 0.82 -1.03 -4.58 -4.73
SmLINC04178-IBu 0 2.31 -5.42 -4.19 -7.97
SmLINC04366-IBu 0 0.53 -1.17 -2.70 -4.36
SmLINC04940-IBu 0 3.94 -4.79 -4.79 -4.79
SmLINC05716-IBu 0 0.29 -1.48 -4.28 -5.77
SmLINC05720-IBu 0 0.01 -1.80 -4.98 -8.04
SmLINC06210-IBu 0 3.36 -0.61 -1.90 -1.98
SmLINC06535-IBu 0 -0.47 -1.74 -4.21 -5.43
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_182090.1 SmLINC00037-IBu 0.89 5.96e-06 1.00e-04
Smp_182090.1 SmLINC00133-IBu 0.93 4.67e-07 2.99e-05
Smp_182090.1 SmLINC00282-IBu 0.90 3.89e-06 1.00e-04
Smp_182090.1 SmLINC00784-IBu 0.86 2.99e-05 5.00e-04
Smp_182090.1 SmLINC00893-IBu 0.81 1.00e-04 2.20e-03
Smp_182090.1 SmLINC01462-IBu 0.83 1.00e-04 1.40e-03
Smp_182090.1 SmLINC01486-IBu 0.92 1.06e-06 5.38e-05
Smp_182090.1 SmLINC01637-IBu 0.83 1.00e-04 1.60e-03
Smp_182090.1 SmLINC03056-IBu 0.87 2.02e-05 4.00e-04
Smp_182090.1 SmLINC03362-IBu 0.90 3.46e-06 1.00e-04
Smp_182090.1 SmLINC03848-IBu 0.91 2.17e-06 8.90e-05
Smp_182090.1 SmLINC03930-IBu 0.92 1.14e-06 5.66e-05
Smp_182090.1 SmLINC04075-IBu 0.88 1.47e-05 3.00e-04
Smp_182090.1 SmLINC04178-IBu 0.85 5.71e-05 9.00e-04
Smp_182090.1 SmLINC04366-IBu 0.88 1.17e-05 2.00e-04
Smp_182090.1 SmLINC04940-IBu 0.86 3.86e-05 7.00e-04
Smp_182090.1 SmLINC05716-IBu 0.87 1.99e-05 4.00e-04
Smp_182090.1 SmLINC05720-IBu 0.80 2.00e-04 2.70e-03
Smp_182090.1 SmLINC06210-IBu 0.88 9.23e-06 2.00e-04
Smp_182090.1 SmLINC06535-IBu 0.86 2.59e-05 5.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00133-IBu 0 0.41 -1.72 -5.79 -6.76
SmLINC00282-IBu 0 0.07 -1.80 -4.82 -4.14
SmLINC00466-IBu 0 -0.03 -2.49 -5.09 -7.41
SmLINC00514-IBu 0 0.52 -8.42 -4.05 -6.11
SmLINC00619-IBu 0 -0.13 -1.79 -4.72 -5.91
SmLINC00763-IBu 0 0.29 -12.05 -6.81 -12.05
SmLINC01088-IBu 0 0.12 -2.15 -3.73 -3.81
SmLINC01341-IBu 0 -0.38 -2.69 -3.98 -4.09
SmLINC01398-IBu 0 0.59 -1.71 -4.36 -11.17
SmLINC01459-IBu 0 0.54 -1.00 -3.24 -4.18
SmLINC01486-IBu 0 0.59 -1.26 -4.75 -5.22
SmLINC01703-IBu 0 0.45 -1.31 -4.28 -4.91
SmLINC01705-IBu 0 0.21 -2.02 -4.88 -6.15
SmLINC01706-IBu 0 1.10 -1.07 -2.54 -3.71
SmLINC01725-IBu 0 1.14 -1.23 -3.05 -5.30
SmLINC02042-IBu 0 -0.18 -2.36 -6.62 -7.23
SmLINC02220-IBu 0 1.37 -1.17 -3.21 -3.83
SmLINC02317-IBu 0 -0.23 -5.11 -7.32 -7.30
SmLINC02334-IBu 0 0.29 -1.21 -3.45 -5.81
SmLINC02609-IBu 0 0.63 -2.31 -10.45 -10.45
SmLINC03129-IBu 0 0.38 -1.94 -3.38 -3.83
SmLINC03362-IBu 0 3.01 -2.44 -3.94 -3.85
SmLINC03565-IBu 0 0.98 -1.34 -4.00 -5.34
SmLINC03663-IBu 0 0.69 -1.37 -3.57 -4.79
SmLINC03716-IBu 0 0.96 -1.59 -3.29 -5.50
SmLINC03848-IBu 0 -0.05 -2.68 -3.98 -4.70
SmLINC03897-IBu 0 0.23 -1.59 -3.45 -4.44
SmLINC03930-IBu 0 -0.18 -2.11 -8.92 -4.64
SmLINC03980-IBu 0 0.74 -9.43 -9.40 -9.93
SmLINC03994-IBu 0 0.17 -2.19 -4.62 -5.34
SmLINC04149-IBu 0 -0.04 -2.24 -7.53 -8.23
SmLINC04166-IBu 0 -0.32 -5.44 -5.44 -5.07
SmLINC04170-IBu 0 0.99 -1.39 -7.39 -3.61
SmLINC04303-IBu 0 1.06 -1.38 -3.42 -4.74
SmLINC04439-IBu 0 -0.04 -2.12 -5.68 -6.38
SmLINC05307-IBu 0 -0.24 -3.06 -4.14 -6.23
SmLINC05569-IBu 0 -0.09 -2.66 -11.90 -11.90
SmLINC05586-IBu 0 0.17 -1.90 -6.28 -7.97
SmLINC05749-IBu 0 0.17 -1.59 -4.81 -5.79
SmLINC05845-IBu 0 1.91 -2.79 -8.03 -8.03
SmLINC05956-IBu 0 0.14 -1.45 -3.73 -4.48
SmLINC06087-IBu 0 0.85 -2.76 -2.63 -5.11
SmLINC06126-IBu 0 0.23 -2.31 -5.95 -6.63
SmLINC06367-IBu 0 -0.17 -2.22 -3.46 -5.10
SmLINC06563-IBu 0 -0.01 -1.84 -6.93 -6.95
SmLINC06771-IBu 0 1.01 -0.88 -11.54 -11.54
Smp_000250.1 0 2.54 -1.10 -4.67 -4.67
Smp_000380.1 0 -0.32 -2.14 -6.41 -7.59
Smp_004530.1 0 -0.23 -3.64 -5.83 -5.83
Smp_019000.1 0 2.12 -4.51 -7.54 -7.54
Smp_020840.1 0 0.75 -4.50 -3.36 -3.70
Smp_030010.1 0 0.62 -6.53 -3.86 -5.21
Smp_032920.1 0 -0.45 -4.95 -3.51 -6.20
Smp_032970.1 0 -0.24 -2.98 -11.57 -7.79
Smp_035200.3 0 -0.02 -1.98 -15.09 -15.09
Smp_036270.4 0 -0.36 -2.80 -8.87 -13.92
Smp_037540.1 0 -0.11 -2.67 -9.05 -7.89
Smp_038560.1 0 0.43 -3.62 -2.65 -4.65
Smp_056680.2 0 0.01 -3.20 -6.32 -3.44
Smp_056680.3 0 0.01 -3.20 -6.32 -3.44
Smp_061590.2 0 0.20 -1.67 -5.35 -5.03
Smp_072320.1 0 3.42 -1.99 -6.26 -3.11
Smp_080920.1 0 1.28 -1.93 -2.08 -3.64
Smp_080920.2 0 2.36 -1.44 -1.25 -3.25
Smp_082240.1 0 -0.22 -3.45 -3.39 -3.32
Smp_094680.1 0 1.98 -4.03 -4.17 -3.96
Smp_095460.1 0 -0.21 -2.74 -7.08 -8.45
Smp_108390.1 0 -0.09 -2.06 -5.55 -4.63
Smp_110400.1 0 0.09 -0.79 -8.02 -8.98
Smp_111340.9 0 1.30 0.22 -5.61 -6.61
Smp_111640.1 0 0.66 -0.66 -11.28 -11.28
Smp_112090.1 0 0.15 -7.44 -10.10 -10.10
Smp_113550.1 0 0.10 -1.71 -6.16 -6.16
Smp_122020.1 0 -0.55 -2.82 -5.25 -6.91
Smp_123100.1 0 1.03 -1.57 -3.15 -3.94
Smp_124830.1 0 -0.28 -9.93 -2.55 -3.33
Smp_125070.1 0 0.25 -4.98 -10.91 -10.91
Smp_128900.1 0 -0.43 -1.87 -6.58 -7.65
Smp_130700.1 0 0.19 -1.83 -3.63 -3.85
Smp_134770.1 0 0.04 -2.01 -4.85 -7.07
Smp_147530.1 0 2.28 -0.50 -3.10 -5.24
Smp_158010.1 0 0.21 -0.51 -5.78 -5.78
Smp_159610.1 0 2.56 -4.50 -4.50 -6.59
Smp_163710.1 0 0.07 -4.89 -1.71 -2.93
Smp_165050.1 0 0.40 -6.48 -1.35 -2.34
Smp_165510.1 0 0.09 -3.88 -8.04 -8.63
Smp_167680.2 0 -0.35 -3.78 -5.67 -5.45
Smp_171360.1 0 3.13 -2.66 -4.89 -4.89
Smp_171700.1 0 2.41 -0.03 -2.60 -6.02
Smp_178170.1 0 1.66 -1.97 -7.62 -7.62
Smp_178390.1 0 0.45 -1.39 -7.29 -7.87
Smp_178960.1 0 -0.22 -5.20 -9.36 -7.07
Smp_182090.1 0 0.34 -10.52 -4.07 -5.68
Smp_182940.1 0 4.10 -0.33 -4.76 -4.76
Smp_185440.1 0 -0.12 -1.84 -5.54 -6.28
Smp_185560.1 0 0.07 -2.33 -8.32 -8.32
Smp_185680.1 0 1.75 -5.39 -10.59 -10.59
Smp_186020.1 0 0.85 -2.69 -7.72 -7.80
Smp_187590.1 0 -0.60 -3.82 -4.10 -3.89
Smp_194830.1 0 -0.36 -5.36 -4.51 -3.97
Smp_195060.1 0 -0.69 -4.00 -2.76 -3.57
Smp_199850.1 0 -0.54 -1.71 -4.55 -4.12
Smp_200160.1 0 0.65 -1.01 -6.08 -6.08
Smp_200470.1 0 1.40 -2.54 -7.67 -7.67
Smp_200970.1 0 0.13 -1.19 -4.97 -7.63
Smp_201410.1 0 0.26 -6.26 -6.26 -6.26
Smp_201940.1 0 1.70 -2.07 -7.99 -7.99
Smp_202490.1 0 0.07 -2.34 -9.58 -9.58
Smp_202670.1 0 2.19 -3.90 -5.33 -5.33
Smp_203770.1 0 -0.07 -1.61 -3.55 -6.15
Smp_204360.1 0 0.81 -0.39 -6.29 -10.08
Smp_204460.1 0 1.62 -2.55 -6.93 -6.93
Smp_204660.1 0 1.01 -4.53 -7.96 -8.16
Smp_205460.1 0 0.98 -3.11 -8.72 -8.72
Smp_205930.1 0 0.31 -2.62 -7.34 -9.86

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_182090.1 SmLINC00133-IBu 0.93 4.67e-07 3.13e-05
Smp_182090.1 SmLINC00282-IBu 0.90 3.89e-06 1.00e-04
Smp_182090.1 SmLINC00466-IBu 0.93 2.48e-07 2.02e-05
Smp_182090.1 SmLINC00514-IBu 0.99 5.96e-13 4.81e-09
Smp_182090.1 SmLINC00619-IBu 0.92 1.10e-06 5.73e-05
Smp_182090.1 SmLINC00763-IBu 0.91 2.07e-06 8.93e-05
Smp_182090.1 SmLINC01088-IBu 0.94 1.28e-07 1.28e-05
Smp_182090.1 SmLINC01341-IBu 0.94 1.63e-07 1.51e-05
Smp_182090.1 SmLINC01398-IBu 0.90 3.07e-06 1.00e-04
Smp_182090.1 SmLINC01459-IBu 0.90 2.88e-06 1.00e-04
Smp_182090.1 SmLINC01486-IBu 0.92 1.06e-06 5.59e-05
Smp_182090.1 SmLINC01703-IBu 0.90 3.46e-06 1.00e-04
Smp_182090.1 SmLINC01705-IBu 0.94 7.40e-08 8.81e-06
Smp_182090.1 SmLINC01706-IBu 0.91 1.70e-06 7.76e-05
Smp_182090.1 SmLINC01725-IBu 0.92 1.13e-06 5.83e-05
Smp_182090.1 SmLINC02042-IBu 0.90 3.33e-06 1.00e-04
Smp_182090.1 SmLINC02220-IBu 0.92 6.65e-07 4.00e-05
Smp_182090.1 SmLINC02317-IBu 0.94 8.42e-08 9.62e-06
Smp_182090.1 SmLINC02334-IBu 0.90 2.92e-06 1.00e-04
Smp_182090.1 SmLINC02609-IBu 0.94 1.88e-07 1.67e-05
Smp_182090.1 SmLINC03129-IBu 0.94 7.78e-08 9.12e-06
Smp_182090.1 SmLINC03362-IBu 0.90 3.46e-06 1.00e-04
Smp_182090.1 SmLINC03565-IBu 0.91 2.40e-06 9.89e-05
Smp_182090.1 SmLINC03663-IBu 0.90 2.71e-06 1.00e-04
Smp_182090.1 SmLINC03716-IBu 0.92 1.17e-06 5.98e-05
Smp_182090.1 SmLINC03848-IBu 0.91 2.17e-06 9.21e-05
Smp_182090.1 SmLINC03897-IBu 0.94 1.70e-07 1.56e-05
Smp_182090.1 SmLINC03930-IBu 0.92 1.14e-06 5.88e-05
Smp_182090.1 SmLINC03980-IBu 0.90 2.87e-06 1.00e-04
Smp_182090.1 SmLINC03994-IBu 0.90 4.43e-06 1.00e-04
Smp_182090.1 SmLINC04149-IBu 0.91 1.23e-06 6.18e-05
Smp_182090.1 SmLINC04166-IBu 0.95 1.70e-08 3.25e-06
Smp_182090.1 SmLINC04170-IBu 0.90 2.92e-06 1.00e-04
Smp_182090.1 SmLINC04303-IBu 0.93 2.17e-07 1.84e-05
Smp_182090.1 SmLINC04439-IBu 0.92 1.14e-06 5.85e-05
Smp_182090.1 SmLINC05307-IBu 0.95 2.01e-08 3.65e-06
Smp_182090.1 SmLINC05569-IBu 0.93 4.28e-07 2.95e-05
Smp_182090.1 SmLINC05586-IBu 0.90 3.38e-06 1.00e-04
Smp_182090.1 SmLINC05749-IBu 0.91 2.09e-06 8.97e-05
Smp_182090.1 SmLINC05845-IBu 0.91 2.45e-06 1.00e-04
Smp_182090.1 SmLINC05956-IBu 0.91 1.29e-06 6.38e-05
Smp_182090.1 SmLINC06087-IBu 0.93 2.89e-07 2.25e-05
Smp_182090.1 SmLINC06126-IBu 0.92 7.81e-07 4.48e-05
Smp_182090.1 SmLINC06367-IBu 0.92 5.83e-07 3.66e-05
Smp_182090.1 SmLINC06563-IBu 0.93 2.43e-07 1.99e-05
Smp_182090.1 SmLINC06771-IBu 0.92 9.95e-07 5.31e-05
Smp_182090.1 Smp_000250.1 0.90 4.83e-06 1.00e-04
Smp_000380.1 Smp_182090.1 0.91 2.36e-06 9.77e-05
Smp_004530.1 Smp_182090.1 0.93 2.79e-07 2.19e-05
Smp_182090.1 Smp_019000.1 0.90 3.76e-06 1.00e-04
Smp_182090.1 Smp_020840.1 0.95 1.77e-08 3.34e-06
Smp_182090.1 Smp_030010.1 0.93 2.49e-07 2.03e-05
Smp_182090.1 Smp_032920.1 0.90 3.21e-06 1.00e-04
Smp_032970.1 Smp_182090.1 0.97 3.46e-10 2.58e-07
Smp_182090.1 Smp_035200.3 0.90 3.28e-06 1.00e-04
Smp_182090.1 Smp_036270.4 0.91 2.26e-06 9.49e-05
Smp_182090.1 Smp_037540.1 0.93 2.86e-07 2.23e-05
Smp_182090.1 Smp_038560.1 0.90 4.36e-06 1.00e-04
Smp_056680.2 Smp_182090.1 0.96 1.12e-08 2.46e-06
Smp_056680.3 Smp_182090.1 0.96 1.12e-08 2.46e-06
Smp_061590.2 Smp_182090.1 0.92 5.72e-07 3.60e-05
Smp_182090.1 Smp_072320.1 0.90 2.64e-06 1.00e-04
Smp_182090.1 Smp_080920.1 0.90 4.78e-06 1.00e-04
Smp_080920.2 Smp_182090.1 0.90 3.38e-06 1.00e-04
Smp_182090.1 Smp_082240.1 0.91 2.20e-06 9.32e-05
Smp_182090.1 Smp_094680.1 0.93 2.81e-07 2.20e-05
Smp_095460.1 Smp_182090.1 0.96 7.74e-09 1.92e-06
Smp_182090.1 Smp_108390.1 0.93 4.79e-07 3.19e-05
Smp_182090.1 Smp_110400.1 0.90 4.23e-06 1.00e-04
Smp_182090.1 Smp_111340.9 0.93 4.83e-07 3.20e-05
Smp_182090.1 Smp_111640.1 0.92 1.00e-06 5.36e-05
Smp_182090.1 Smp_112090.1 0.90 3.88e-06 1.00e-04
Smp_182090.1 Smp_113550.1 0.91 2.21e-06 9.34e-05
Smp_182090.1 Smp_122020.1 0.90 3.31e-06 1.00e-04
Smp_182090.1 Smp_123100.1 0.95 2.68e-08 4.42e-06
Smp_182090.1 Smp_124830.1 0.92 6.24e-07 3.83e-05
Smp_125070.1 Smp_182090.1 0.94 1.26e-07 1.27e-05
Smp_182090.1 Smp_128900.1 0.91 1.67e-06 7.68e-05
Smp_182090.1 Smp_130700.1 0.93 1.99e-07 1.73e-05
Smp_134770.1 Smp_182090.1 0.94 8.15e-08 9.41e-06
Smp_182090.1 Smp_147530.1 0.90 2.71e-06 1.00e-04
Smp_182090.1 Smp_158010.1 0.94 1.11e-07 1.16e-05
Smp_182090.1 Smp_159610.1 0.90 3.45e-06 1.00e-04
Smp_163710.1 Smp_182090.1 0.98 3.64e-11 6.18e-08
Smp_182090.1 Smp_165050.1 0.93 2.96e-07 2.28e-05
Smp_182090.1 Smp_165510.1 0.93 4.60e-07 3.10e-05
Smp_182090.1 Smp_167680.2 0.92 9.03e-07 4.96e-05
Smp_182090.1 Smp_171360.1 0.90 2.52e-06 1.00e-04
Smp_182090.1 Smp_171700.1 0.94 1.70e-07 1.56e-05
Smp_182090.1 Smp_178170.1 0.92 6.66e-07 4.01e-05
Smp_178390.1 Smp_182090.1 0.93 4.07e-07 2.85e-05
Smp_178960.1 Smp_182090.1 0.91 2.14e-06 9.14e-05
Smp_182940.1 Smp_182090.1 0.90 2.54e-06 1.00e-04
Smp_185440.1 Smp_182090.1 0.92 7.36e-07 4.30e-05
Smp_182090.1 Smp_185560.1 0.92 9.36e-07 5.09e-05
Smp_185680.1 Smp_182090.1 0.95 4.48e-08 6.27e-06
Smp_182090.1 Smp_186020.1 0.91 2.23e-06 9.40e-05
Smp_182090.1 Smp_187590.1 0.90 3.99e-06 1.00e-04
Smp_182090.1 Smp_194830.1 0.97 2.16e-09 8.36e-07
Smp_195060.1 Smp_182090.1 0.93 3.10e-07 2.36e-05
Smp_182090.1 Smp_199850.1 0.91 1.49e-06 7.08e-05
Smp_182090.1 Smp_200160.1 0.95 1.91e-08 3.52e-06
Smp_182090.1 Smp_200470.1 0.92 1.09e-06 5.70e-05
Smp_182090.1 Smp_200970.1 0.92 9.87e-07 5.28e-05
Smp_201410.1 Smp_182090.1 0.92 5.39e-07 3.46e-05
Smp_182090.1 Smp_201940.1 0.96 5.25e-09 1.49e-06
Smp_202490.1 Smp_182090.1 0.96 6.85e-09 1.77e-06
Smp_182090.1 Smp_202670.1 0.91 1.94e-06 8.52e-05
Smp_182090.1 Smp_203770.1 0.94 1.78e-07 1.60e-05
Smp_182090.1 Smp_204360.1 0.92 7.86e-07 4.50e-05
Smp_182090.1 Smp_204460.1 0.95 1.55e-08 3.06e-06
Smp_182090.1 Smp_204660.1 0.93 3.16e-07 2.39e-05
Smp_182090.1 Smp_205460.1 0.95 5.46e-08 7.17e-06
Smp_182090.1 Smp_205930.1 0.96 1.00e-08 2.29e-06