Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_181730.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02255-IBu 0 -0.86 -1.80 -3.72 -4.71
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
Smp_181730.1 0 -0.37 -1.35 -5.07 -5.51

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_181730.1 SmLINC02255-IBu 0.81 2.00e-04 2.50e-03
Smp_181730.1 SmLINC02657-IBu 0.81 2.00e-04 2.30e-03
Smp_181730.1 SmLINC03849-IBu 0.81 2.00e-04 2.50e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_181730.1 0 -0.37 -1.35 -5.07 -5.51
Smp_185350.1 0 -1.75 -2.87 -10.48 -10.48
Smp_201750.1 0 -0.56 -4.79 -7.34 -11.47
Smp_203800.1 0 0.03 -0.31 -15.15 -10.99
Smp_206090.1 0 -0.17 -0.84 -12.35 -12.13

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_181730.1 Smp_185350.1 0.90 3.37e-06 1.00e-04
Smp_201750.1 Smp_181730.1 0.92 8.45e-07 4.74e-05
Smp_203800.1 Smp_181730.1 0.94 1.06e-07 1.13e-05
Smp_206090.1 Smp_181730.1 0.97 6.06e-10 3.69e-07