Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_181440.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC02657-IBu 0 -0.90 -1.95 -11.76 -11.76
Smp_181440.1 0 6.14 0.00 7.84 7.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_181440.1 SmLINC02657-IBu -0.57 2.38e-02 6.51e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC01171-IBu 0 4.66 1.75 6.39 6.26
SmLINC03236-IBu 0 5.69 1.95 7.32 7.27
SmLINC04481-IBu 0 4.43 2.49 6.85 2.74
SmLINC04637-IBu 0 5.61 0.00 9.87 8.40
SmLINC06010-IBu 0 1.91 2.45 5.62 4.62
Smp_181440.1 0 6.14 0.00 7.84 7.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_181440.1 SmLINC00376-IBu 0.82 1.00e-04 1.70e-03
Smp_181440.1 SmLINC01171-IBu 0.86 3.05e-05 5.00e-04
Smp_181440.1 SmLINC03236-IBu 0.90 4.44e-06 1.00e-04
Smp_181440.1 SmLINC04481-IBu 0.89 5.49e-06 1.00e-04
Smp_181440.1 SmLINC04637-IBu 0.82 1.00e-04 2.00e-03
Smp_181440.1 SmLINC06010-IBu 0.84 6.72e-05 1.00e-03