Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_181330.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC02026-IBu 0 -0.31 0.73 -7.72 -1.09
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_181330.1 0 -0.70 -0.19 -8.45 -6.28

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_181330.1 SmLINC00376-IBu -0.83 1.00e-04 1.60e-03
Smp_181330.1 SmLINC00525-IBu -0.88 1.44e-05 3.00e-04
Smp_181330.1 SmLINC01084-IBu -0.86 3.08e-05 6.00e-04
Smp_181330.1 SmLINC01431-IBu -0.81 2.00e-04 2.50e-03
Smp_181330.1 SmLINC02026-IBu 0.84 7.25e-05 1.10e-03
Smp_181330.1 SmLINC04421-IBu -0.81 2.00e-04 2.40e-03
Smp_181330.1 SmLINC06024-IBu -0.84 5.99e-05 9.00e-04
Smp_181330.1 SmLINC06490-IBu 0.86 3.76e-05 6.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_042590.2 0 -1.65 -1.31 -11.45 -8.14
Smp_181330.1 0 -0.70 -0.19 -8.45 -6.28
Smp_184180.1 0 -0.01 -0.17 -13.99 -13.99

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_181330.1 Smp_042590.2 0.91 1.76e-06 7.97e-05
Smp_181330.1 Smp_184180.1 0.90 4.68e-06 1.00e-04