Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_180930.1 Data


Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC04271-IBu 0 0.79 -0.67 -2.59 -4.22
Smp_180930.1 0 0.47 -1.94 2.04 3.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_180930.1 SmLINC04271-IBu -0.59 1.81e-02 5.35e-02
Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04627-IBu 0 0.00 0.00 6.80 10.25
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_180930.1 0 0.47 -1.94 2.04 3.34

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_180930.1 SmLINC00001-IBu 0.94 1.07e-07 1.08e-05
Smp_180930.1 SmLINC00004-IBu 0.95 4.93e-08 6.31e-06
Smp_180930.1 SmLINC00369-IBu 0.83 1.00e-04 1.50e-03
Smp_180930.1 SmLINC00525-IBu 0.86 2.80e-05 5.00e-04
Smp_180930.1 SmLINC01084-IBu 0.87 1.68e-05 3.00e-04
Smp_180930.1 SmLINC01122-IBu 0.80 2.00e-04 3.00e-03
Smp_180930.1 SmLINC01431-IBu 0.87 2.06e-05 4.00e-04
Smp_180930.1 SmLINC01520-IBu 0.84 8.87e-05 1.20e-03
Smp_180930.1 SmLINC02029-IBu 0.86 3.02e-05 5.00e-04
Smp_180930.1 SmLINC02084-IBu 0.81 2.00e-04 2.60e-03
Smp_180930.1 SmLINC02376-IBu 0.83 1.00e-04 1.40e-03
Smp_180930.1 SmLINC02394-IBu 0.92 1.01e-06 5.19e-05
Smp_180930.1 SmLINC02539-IBu 0.89 7.09e-06 2.00e-04
Smp_180930.1 SmLINC02540-IBu 0.82 1.00e-04 1.90e-03
Smp_180930.1 SmLINC02577-IBu 0.86 3.88e-05 7.00e-04
Smp_180930.1 SmLINC02783-IBu 0.80 2.00e-04 3.00e-03
Smp_180930.1 SmLINC03326-IBu 0.85 4.06e-05 7.00e-04
Smp_180930.1 SmLINC04235-IBu 0.89 6.16e-06 1.00e-04
Smp_180930.1 SmLINC04421-IBu 0.91 1.97e-06 8.33e-05
Smp_180930.1 SmLINC04423-IBu 0.90 3.21e-06 1.00e-04
Smp_180930.1 SmLINC04478-IBu 0.83 1.00e-04 1.40e-03
Smp_180930.1 SmLINC04521-IBu 0.80 2.00e-04 2.90e-03
Smp_180930.1 SmLINC04627-IBu 0.83 1.00e-04 1.40e-03
Smp_180930.1 SmLINC05274-IBu -0.81 1.00e-04 2.30e-03
Smp_180930.1 SmLINC05289-IBu 0.93 3.80e-07 2.59e-05
Smp_180930.1 SmLINC05604-IBu 0.91 1.61e-06 7.21e-05
Smp_180930.1 SmLINC05684-IBu 0.83 1.00e-04 1.50e-03
Smp_180930.1 SmLINC06024-IBu 0.89 6.30e-06 1.00e-04
Smp_180930.1 SmLINC06145-IBu 0.85 5.91e-05 9.00e-04
Smp_180930.1 SmLINC06239-IBu 0.82 1.00e-04 1.70e-03
Smp_180930.1 SmLINC06490-IBu -0.84 6.57e-05 1.00e-03
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_086450.3 0 0.00 0.00 9.98 12.32
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_180930.1 0 0.47 -1.94 2.04 3.34
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_004780.3 Smp_180930.1 0.92 1.05e-06 5.53e-05
Smp_016490.2 Smp_180930.1 0.91 1.50e-06 7.10e-05
Smp_024180.1 Smp_180930.1 0.94 6.18e-08 7.79e-06
Smp_024180.2 Smp_180930.1 0.95 2.19e-08 3.87e-06
Smp_180930.1 Smp_028870.1 0.92 7.71e-07 4.44e-05
Smp_033260.1 Smp_180930.1 0.93 2.67e-07 2.12e-05
Smp_038870.2 Smp_180930.1 0.91 1.77e-06 8.01e-05
Smp_050350.3 Smp_180930.1 0.94 6.90e-08 8.40e-06
Smp_180930.1 Smp_052280.2 0.90 3.02e-06 1.00e-04
Smp_056460.1 Smp_180930.1 0.91 1.84e-06 8.22e-05
Smp_180930.1 Smp_079420.1 0.91 1.47e-06 7.00e-05
Smp_086450.3 Smp_180930.1 0.90 4.87e-06 1.00e-04
Smp_094050.1 Smp_180930.1 0.94 9.71e-08 1.06e-05
Smp_180930.1 Smp_102780.1 0.91 1.76e-06 7.97e-05
Smp_180930.1 Smp_130100.1 0.90 3.63e-06 1.00e-04
Smp_180930.1 Smp_131490.1 0.92 6.70e-07 4.03e-05
Smp_140720.1 Smp_180930.1 0.91 2.03e-06 8.79e-05
Smp_155570.1 Smp_180930.1 0.93 5.07e-07 3.31e-05
Smp_159650.1 Smp_180930.1 0.92 1.13e-06 5.84e-05
Smp_180930.1 Smp_192780.1 0.91 2.48e-06 1.00e-04
Smp_180930.1 Smp_201910.1 0.90 3.55e-06 1.00e-04
Smp_180930.1 Smp_202610.1 0.92 5.63e-07 3.57e-05
Smp_203030.1 Smp_180930.1 0.92 9.42e-07 5.11e-05