Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_180630.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00372-IBu 0 1.42 3.02 -1.83 -2.95
SmLINC01316-IBu 0 -0.35 0.57 -11.60 -4.95
SmLINC02646-IBu 0 0.70 0.79 -6.84 -2.55
SmLINC04430-IBu 0 1.35 4.06 1.40 0.01
SmLINC05559-IBu 0 -0.72 2.59 -1.58 -1.98
SmLINC06646-IBu 0 1.59 1.70 -7.49 -7.49
SmLINC06700-IBu 0 2.95 4.73 1.69 -0.46
SmLINC06836-IBu 0 5.91 8.23 0.00 0.00
Smp_180630.1 0 0.12 1.09 -6.32 -9.26

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_180630.1 SmLINC00372-IBu 0.94 9.24e-08 9.71e-06
Smp_180630.1 SmLINC01316-IBu 0.92 1.00e-06 5.16e-05
Smp_180630.1 SmLINC02646-IBu 0.91 1.65e-06 7.34e-05
Smp_180630.1 SmLINC04430-IBu 0.82 1.00e-04 1.70e-03
Smp_180630.1 SmLINC05559-IBu 0.86 2.67e-05 5.00e-04
Smp_180630.1 SmLINC06646-IBu 0.90 2.96e-06 1.00e-04
Smp_180630.1 SmLINC06700-IBu 0.94 7.38e-08 8.33e-06
Smp_180630.1 SmLINC06836-IBu 0.93 3.17e-07 2.29e-05
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_017650.1 0 9.51 10.68 -7.98 0.00
Smp_021340.3 0 9.76 11.05 9.34 9.26
Smp_032120.1 0 0.03 1.02 -10.65 -10.65
Smp_034840.1 0 12.23 13.88 0.00 0.00
Smp_036270.3 0 1.18 2.21 -10.17 -10.17
Smp_059340.3 0 0.76 1.23 -11.82 -11.82
Smp_059530.1 0 2.86 3.32 -11.10 -11.10
Smp_062070.1 0 9.47 10.97 6.18 8.79
Smp_062610.2 0 -1.05 -0.32 -6.81 -10.38
Smp_063650.3 0 8.82 10.72 0.00 0.00
Smp_083380.2 0 9.13 10.31 0.00 0.00
Smp_084940.2 0 10.34 11.98 9.66 9.92
Smp_098370.1 0 9.63 11.25 6.43 9.48
Smp_099160.4 0 11.96 13.30 11.03 12.32
Smp_103540.1 0 11.43 12.63 8.84 9.65
Smp_159070.3 0 -0.25 1.24 -10.95 -4.48
Smp_159150.1 0 12.28 13.98 12.38 11.81
Smp_168800.1 0 0.13 -0.51 -10.46 -10.46
Smp_180630.1 0 0.12 1.09 -6.32 -9.26
Smp_200120.1 0 0.50 0.80 -8.32 -11.63

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_180630.1 Smp_017650.1 0.97 1.99e-10 1.80e-07
Smp_180630.1 Smp_021340.3 0.95 3.90e-08 5.71e-06
Smp_180630.1 Smp_032120.1 0.97 3.28e-10 2.50e-07
Smp_180630.1 Smp_034840.1 0.96 1.37e-08 2.81e-06
Smp_180630.1 Smp_036270.3 0.96 1.12e-08 2.46e-06
Smp_180630.1 Smp_059340.3 0.97 1.88e-09 7.64e-07
Smp_180630.1 Smp_059530.1 0.91 1.53e-06 7.20e-05
Smp_180630.1 Smp_062070.1 0.94 8.78e-08 9.90e-06
Smp_062610.2 Smp_180630.1 0.97 2.19e-09 8.46e-07
Smp_180630.1 Smp_063650.3 0.94 8.22e-08 9.46e-06
Smp_180630.1 Smp_083380.2 0.95 3.52e-08 5.33e-06
Smp_180630.1 Smp_084940.2 0.95 2.81e-08 4.57e-06
Smp_180630.1 Smp_098370.1 0.95 1.51e-08 3.01e-06
Smp_180630.1 Smp_099160.4 0.94 7.61e-08 8.98e-06
Smp_103540.1 Smp_180630.1 0.96 5.93e-09 1.61e-06
Smp_180630.1 Smp_159070.3 0.92 6.73e-07 4.04e-05
Smp_180630.1 Smp_159150.1 0.91 2.21e-06 9.35e-05
Smp_180630.1 Smp_168800.1 0.92 1.07e-06 5.61e-05
Smp_180630.1 Smp_200120.1 0.92 7.65e-07 4.42e-05