Schistosoma mansoni lncRNAs Database



This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.


Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.


Smp_180500.1 Data


Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00294-IBu 0 0.33 -0.47 -2.74 -4.74
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01520-IBu 0 0.00 0.00 7.35 9.60
SmLINC02029-IBu 0 0.00 0.00 6.82 9.29
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02540-IBu 0 0.00 0.00 8.87 10.81
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC02577-IBu 0 0.00 1.73 7.37 9.60
SmLINC02783-IBu 0 0.00 3.67 6.24 9.23
SmLINC03326-IBu 0 1.89 -2.65 4.69 6.66
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04235-IBu 0 0.00 1.32 6.44 8.84
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04896-IBu 0 -1.86 -3.75 1.58 4.07
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05404-IBu 0 -1.83 -1.83 1.64 4.45
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC05684-IBu 0 0.98 2.20 5.42 8.30
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06239-IBu 0 -0.42 0.14 2.33 5.24
SmLINC06415-IBu 0 0.00 5.09 7.86 8.72
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
Smp_180500.1 0 -1.30 -2.77 1.08 2.37

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_180500.1 SmLINC00001-IBu 0.93 5.05e-07 3.16e-05
Smp_180500.1 SmLINC00004-IBu 0.95 1.68e-08 3.03e-06
Smp_180500.1 SmLINC00294-IBu -0.82 1.00e-04 1.80e-03
Smp_180500.1 SmLINC00376-IBu 0.83 9.20e-05 1.30e-03
Smp_180500.1 SmLINC00525-IBu 0.93 4.95e-07 3.12e-05
Smp_180500.1 SmLINC01084-IBu 0.91 1.70e-06 7.50e-05
Smp_180500.1 SmLINC01431-IBu 0.87 1.98e-05 4.00e-04
Smp_180500.1 SmLINC01520-IBu 0.87 2.19e-05 4.00e-04
Smp_180500.1 SmLINC02029-IBu 0.85 4.17e-05 7.00e-04
Smp_180500.1 SmLINC02084-IBu 0.83 1.00e-04 1.40e-03
Smp_180500.1 SmLINC02376-IBu 0.89 8.15e-06 2.00e-04
Smp_180500.1 SmLINC02394-IBu 0.85 4.04e-05 7.00e-04
Smp_180500.1 SmLINC02539-IBu 0.89 6.48e-06 1.00e-04
Smp_180500.1 SmLINC02540-IBu 0.83 1.00e-04 1.50e-03
Smp_180500.1 SmLINC02545-IBu 0.85 5.67e-05 9.00e-04
Smp_180500.1 SmLINC02546-IBu 0.83 1.00e-04 1.50e-03
Smp_180500.1 SmLINC02577-IBu 0.88 1.23e-05 3.00e-04
Smp_180500.1 SmLINC02783-IBu 0.83 1.00e-04 1.40e-03
Smp_180500.1 SmLINC03326-IBu 0.87 1.70e-05 3.00e-04
Smp_180500.1 SmLINC03849-IBu -0.88 1.41e-05 3.00e-04
Smp_180500.1 SmLINC03927-IBu 0.82 1.00e-04 1.70e-03
Smp_180500.1 SmLINC04235-IBu 0.91 1.35e-06 6.36e-05
Smp_180500.1 SmLINC04421-IBu 0.91 2.51e-06 9.88e-05
Smp_180500.1 SmLINC04423-IBu 0.91 1.95e-06 8.26e-05
Smp_180500.1 SmLINC04896-IBu 0.80 2.00e-04 3.00e-03
Smp_180500.1 SmLINC05289-IBu 0.87 2.40e-05 5.00e-04
Smp_180500.1 SmLINC05404-IBu 0.86 2.83e-05 5.00e-04
Smp_180500.1 SmLINC05604-IBu 0.92 5.74e-07 3.47e-05
Smp_180500.1 SmLINC05684-IBu 0.85 5.18e-05 8.00e-04
Smp_180500.1 SmLINC06024-IBu 0.93 2.44e-07 1.90e-05
Smp_180500.1 SmLINC06239-IBu 0.84 7.60e-05 1.10e-03
Smp_180500.1 SmLINC06415-IBu 0.85 5.79e-05 9.00e-04
Smp_180500.1 SmLINC06490-IBu -0.86 3.84e-05 7.00e-04
Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data


Gene ID Cerc 3S 24S Male Female
Smp_004780.3 0 8.47 8.56 12.10 13.78
Smp_016490.2 0 1.32 2.33 8.95 11.08
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_028870.1 0 1.64 3.08 9.06 11.09
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_102780.1 0 3.53 4.72 9.81 11.88
Smp_130100.1 0 -1.34 3.61 11.71 14.01
Smp_131490.1 0 4.93 6.36 11.30 13.29
Smp_137810.1 0 6.00 3.74 9.29 10.87
Smp_140720.1 0 4.90 5.49 10.97 12.76
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_159650.1 0 4.04 4.18 8.26 10.40
Smp_180500.1 0 -1.30 -2.77 1.08 2.37
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_202610.1 0 0.45 2.30 9.93 11.71
Smp_203030.1 0 2.55 0.41 8.36 10.39

Pearson Correlation Coefficient Data - Download data


Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_180500.1 Smp_004780.3 0.92 1.14e-06 5.86e-05
Smp_180500.1 Smp_016490.2 0.91 1.39e-06 6.75e-05
Smp_180500.1 Smp_024180.2 0.90 3.17e-06 1.00e-04
Smp_180500.1 Smp_028870.1 0.91 1.66e-06 7.63e-05
Smp_180500.1 Smp_033260.1 0.92 8.78e-07 4.87e-05
Smp_180500.1 Smp_050350.3 0.93 2.23e-07 1.88e-05
Smp_180500.1 Smp_052280.2 0.90 4.06e-06 1.00e-04
Smp_180500.1 Smp_056460.1 0.90 3.95e-06 1.00e-04
Smp_180500.1 Smp_094050.1 0.91 1.71e-06 7.79e-05
Smp_180500.1 Smp_095410.1 0.90 4.87e-06 1.00e-04
Smp_180500.1 Smp_102780.1 0.91 1.48e-06 7.05e-05
Smp_180500.1 Smp_130100.1 0.91 1.24e-06 6.24e-05
Smp_180500.1 Smp_131490.1 0.90 4.16e-06 1.00e-04
Smp_180500.1 Smp_137810.1 0.93 3.66e-07 2.65e-05
Smp_180500.1 Smp_140720.1 0.93 2.02e-07 1.75e-05
Smp_180500.1 Smp_155570.1 0.93 2.61e-07 2.09e-05
Smp_180500.1 Smp_159650.1 0.90 3.04e-06 1.00e-04
Smp_180500.1 Smp_192780.1 0.94 7.77e-08 9.11e-06
Smp_180500.1 Smp_202610.1 0.92 6.33e-07 3.87e-05
Smp_180500.1 Smp_203030.1 0.93 2.65e-07 2.11e-05