Schistosoma mansoni lncRNAs Database


This site contains the web resource described in the paper "Atlas of Schistosoma mansoni long non-coding RNAs and their expression correlation to protein-coding genes" (2018) by Elton J. R. Vasconcelos, Vinícius C. Mesel, Lucas F. daSilva, David S. Pires, Guilherme M. Lavezzo, Adriana S. A. Pereira, Murilo S. Amaral and Sergio Verjovski-Almeida, Database, Volume 2018: bay068, https://doi.org/10.1093/database/bay068.

Based on data from Vasconcelos, EJR et al., The Schistosoma mansoni genome encodes thousands of long noncoding RNAs predicted to be functional at different parasite life-cycle stages. Scientific Reports 7: 10508, 2017.

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Smp_180440.1 Data

Correlation between Smp_180440.1 Protein Coding Gene and neighbor SmLINC (neighbor to up to two Smps upstream or two Smps downstream of the SmLINC in the genome) or SmLINCs with putative trans-acting mechanisms, with correlation coefficient r ≥ 0.5 or r ≤ -0.5 [ Click Here for Details ]

Fig. 7A S3 for with r ≥ 0.5 or r ≤ -0.5.

Expression Fold Change Data [log2(FC)] - Download data

Pearson Correlation Coefficient Data - Download data

Correlation between Smp_180440.1 and robust SmLINCs (presenting four functional traits) across life cycle stages, with correlation coefficient r ≥ 0.8 or r ≤ -0.8 [ Click Here for Details ]

Fig. 6A for with r ≥ 0.8 or r ≤ -0.8.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
SmLINC00001-IBu 0 1.12 2.22 5.99 7.57
SmLINC00004-IBu 0 0.00 0.00 9.26 10.68
SmLINC00369-IBu 0 1.32 0.40 6.04 6.28
SmLINC00376-IBu 0 1.87 -0.39 3.34 3.93
SmLINC00525-IBu 0 -1.18 -2.31 1.77 2.53
SmLINC00548-IBu 0 1.58 1.11 7.48 7.20
SmLINC00633-IBu 0 1.89 0.00 7.59 7.46
SmLINC01084-IBu 0 -4.17 -2.32 2.88 3.57
SmLINC01122-IBu 0 0.00 0.00 6.36 6.32
SmLINC01139-IBu 0 -1.59 -5.89 3.96 3.29
SmLINC01431-IBu 0 4.28 4.33 10.35 10.82
SmLINC01432-IBu 0 0.44 1.90 4.35 4.98
SmLINC01435-IBu 0 -2.57 1.02 6.17 5.55
SmLINC01538-IBu 0 0.00 3.62 10.85 10.43
SmLINC01569-IBu 0 -0.90 -0.28 4.61 4.49
SmLINC01733-IBu 0 0.89 2.09 5.78 5.68
SmLINC01746-IBu 0 -3.80 -0.66 2.43 2.13
SmLINC02084-IBu 0 2.05 2.87 9.42 9.88
SmLINC02376-IBu 0 0.00 0.00 5.89 7.89
SmLINC02394-IBu 0 0.00 0.00 9.18 10.51
SmLINC02539-IBu 0 0.00 0.00 8.89 10.77
SmLINC02545-IBu 0 3.54 1.98 7.53 8.45
SmLINC02546-IBu 0 1.90 1.01 8.94 9.30
SmLINC03108-IBu 0 1.12 -0.64 3.64 3.93
SmLINC03309-IBu 0 -0.28 0.72 5.03 4.47
SmLINC03693-IBu 0 0.04 0.11 4.65 4.21
SmLINC03849-IBu 0 -0.25 -0.95 -4.04 -4.58
SmLINC03927-IBu 0 0.00 3.30 7.68 8.27
SmLINC04421-IBu 0 -0.40 -1.98 2.75 3.71
SmLINC04423-IBu 0 -0.15 -1.31 2.28 3.30
SmLINC04478-IBu 0 -1.64 -5.06 4.33 4.42
SmLINC04521-IBu 0 0.00 2.57 11.17 11.06
SmLINC04684-IBu 0 0.48 -0.86 3.35 3.38
SmLINC05147-IBu 0 -2.38 -0.94 2.89 2.87
SmLINC05258-IBu 0 0.71 -0.55 3.56 3.34
SmLINC05274-IBu 0 -0.85 -1.40 -4.98 -5.55
SmLINC05289-IBu 0 0.00 0.00 7.07 8.36
SmLINC05604-IBu 0 3.08 0.00 9.77 11.08
SmLINC06024-IBu 0 -2.97 -2.19 1.09 1.92
SmLINC06145-IBu 0 1.04 -4.71 4.38 4.76
SmLINC06221-IBu 0 2.16 3.44 6.39 5.80
SmLINC06449-IBu 0 2.33 4.31 7.30 6.63
SmLINC06490-IBu 0 -0.11 0.31 -3.82 -4.89
SmLINC06543-IBu 0 -0.52 0.39 3.89 3.37
Smp_180440.1 0 -0.08 -1.33 2.82 3.54

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_180440.1 SmLINC00001-IBu 0.90 4.85e-06 1.00e-04
Smp_180440.1 SmLINC00004-IBu 0.92 1.08e-06 5.45e-05
Smp_180440.1 SmLINC00369-IBu 0.95 3.54e-08 5.04e-06
Smp_180440.1 SmLINC00376-IBu 0.84 7.22e-05 1.10e-03
Smp_180440.1 SmLINC00525-IBu 0.92 5.25e-07 3.25e-05
Smp_180440.1 SmLINC00548-IBu 0.85 4.43e-05 7.00e-04
Smp_180440.1 SmLINC00633-IBu 0.90 2.95e-06 1.00e-04
Smp_180440.1 SmLINC01084-IBu 0.95 3.52e-08 5.02e-06
Smp_180440.1 SmLINC01122-IBu 0.90 2.57e-06 1.00e-04
Smp_180440.1 SmLINC01139-IBu 0.81 1.00e-04 2.30e-03
Smp_180440.1 SmLINC01431-IBu 0.96 8.09e-09 1.85e-06
Smp_180440.1 SmLINC01432-IBu 0.87 1.74e-05 3.00e-04
Smp_180440.1 SmLINC01435-IBu 0.83 1.00e-04 1.50e-03
Smp_180440.1 SmLINC01538-IBu 0.88 1.24e-05 3.00e-04
Smp_180440.1 SmLINC01569-IBu 0.90 4.27e-06 1.00e-04
Smp_180440.1 SmLINC01733-IBu 0.89 7.62e-06 2.00e-04
Smp_180440.1 SmLINC01746-IBu 0.84 6.27e-05 1.00e-03
Smp_180440.1 SmLINC02084-IBu 0.92 6.21e-07 3.66e-05
Smp_180440.1 SmLINC02376-IBu 0.81 2.00e-04 2.70e-03
Smp_180440.1 SmLINC02394-IBu 0.88 1.10e-05 2.00e-04
Smp_180440.1 SmLINC02539-IBu 0.82 1.00e-04 1.80e-03
Smp_180440.1 SmLINC02545-IBu 0.81 2.00e-04 2.50e-03
Smp_180440.1 SmLINC02546-IBu 0.88 1.10e-05 2.00e-04
Smp_180440.1 SmLINC03108-IBu 0.84 7.94e-05 1.10e-03
Smp_180440.1 SmLINC03309-IBu 0.85 4.29e-05 7.00e-04
Smp_180440.1 SmLINC03693-IBu 0.85 5.19e-05 8.00e-04
Smp_180440.1 SmLINC03849-IBu -0.84 6.01e-05 9.00e-04
Smp_180440.1 SmLINC03927-IBu 0.86 2.67e-05 5.00e-04
Smp_180440.1 SmLINC04421-IBu 0.95 4.81e-08 6.21e-06
Smp_180440.1 SmLINC04423-IBu 0.91 1.26e-06 6.06e-05
Smp_180440.1 SmLINC04478-IBu 0.92 8.47e-07 4.56e-05
Smp_180440.1 SmLINC04521-IBu 0.94 1.24e-07 1.19e-05
Smp_180440.1 SmLINC04684-IBu 0.83 1.00e-04 1.40e-03
Smp_180440.1 SmLINC05147-IBu 0.91 1.45e-06 6.70e-05
Smp_180440.1 SmLINC05258-IBu 0.84 6.70e-05 1.00e-03
Smp_180440.1 SmLINC05274-IBu -0.84 8.21e-05 1.20e-03
Smp_180440.1 SmLINC05289-IBu 0.90 3.57e-06 1.00e-04
Smp_180440.1 SmLINC05604-IBu 0.91 1.61e-06 7.21e-05
Smp_180440.1 SmLINC06024-IBu 0.94 1.26e-07 1.20e-05
Smp_180440.1 SmLINC06145-IBu 0.93 3.35e-07 2.37e-05
Smp_180440.1 SmLINC06221-IBu 0.82 1.00e-04 1.80e-03
Smp_180440.1 SmLINC06449-IBu 0.80 2.00e-04 2.80e-03
Smp_180440.1 SmLINC06490-IBu -0.87 1.59e-05 3.00e-04
Smp_180440.1 SmLINC06543-IBu 0.84 7.94e-05 1.10e-03

Correlation between Smp_180440.1 and highly differentially expressed Smps (log2 FC ≥ 10 in at least one developmental stage) and/or SmLINCs, with correlation coefficient r ≥ 0.9 or r ≤ -0.9 [ Click Here for Details ]

Fig. S5 for with r ≥ 0.9 or r ≤ -0.9.

Expression Fold Change Data [log2(FC)] - Download data

Gene ID Cerc 3S 24S Male Female
Smp_015850.2 0 -0.79 -1.42 -13.43 -13.43
Smp_024180.1 0 3.08 4.23 10.66 11.72
Smp_024180.2 0 -0.35 -0.80 9.03 10.04
Smp_031040.1 0 8.57 0.03 12.35 12.40
Smp_033260.1 0 0.00 0.00 11.56 12.33
Smp_038870.2 0 -10.39 -10.39 1.75 2.41
Smp_040970.2 0 9.27 9.42 14.46 14.83
Smp_050350.3 0 7.35 7.57 12.17 13.18
Smp_052280.2 0 4.60 9.23 11.90 12.79
Smp_056460.1 0 0.00 0.00 11.24 12.03
Smp_058660.1 0 1.16 3.97 10.53 10.53
Smp_079420.1 0 6.65 2.37 11.69 12.23
Smp_094050.1 0 0.00 6.75 11.34 12.21
Smp_095410.1 0 0.00 0.00 10.39 11.31
Smp_123550.1 0 2.43 2.16 11.52 11.47
Smp_137000.2 0 7.58 1.98 11.35 11.89
Smp_145400.1 0 4.59 7.69 11.32 11.39
Smp_151120.1 0 2.34 3.50 10.04 9.86
Smp_155570.1 0 -0.46 1.69 9.73 11.27
Smp_156930.1 0 0.00 0.00 11.62 12.40
Smp_159070.2 0 -0.62 -11.03 1.85 1.97
Smp_172480.1 0 4.53 4.98 10.04 9.89
Smp_172960.1 0 3.27 6.54 14.72 15.13
Smp_180440.1 0 -0.08 -1.33 2.82 3.54
Smp_192780.1 0 1.26 4.06 9.03 10.25
Smp_194860.1 0 3.09 7.72 14.07 14.58
Smp_201910.1 0 3.92 4.88 11.60 12.63
Smp_203090.1 0 0.00 0.00 10.35 10.67
Smp_205270.1 0 0.71 -0.40 10.02 9.83
Smp_212510.1 0 -0.05 -0.36 -7.08 -10.79

Pearson Correlation Coefficient Data - Download data

Compared Gene Gene Pearson Correlation Value p-value B.-H. adjusted p-value
Smp_180440.1 Smp_015850.2 -0.91 1.27e-06 6.32e-05
Smp_024180.1 Smp_180440.1 0.94 1.01e-07 1.09e-05
Smp_024180.2 Smp_180440.1 0.97 2.03e-09 8.03e-07
Smp_031040.1 Smp_180440.1 0.93 2.56e-07 2.06e-05
Smp_033260.1 Smp_180440.1 0.98 3.48e-12 1.43e-08
Smp_038870.2 Smp_180440.1 0.96 2.32e-09 8.77e-07
Smp_040970.2 Smp_180440.1 0.96 1.04e-08 2.35e-06
Smp_050350.3 Smp_180440.1 0.96 3.78e-09 1.20e-06
Smp_052280.2 Smp_180440.1 0.94 1.60e-07 1.50e-05
Smp_056460.1 Smp_180440.1 0.96 5.01e-09 1.44e-06
Smp_058660.1 Smp_180440.1 0.91 2.50e-06 1.00e-04
Smp_180440.1 Smp_079420.1 0.98 1.02e-11 2.78e-08
Smp_094050.1 Smp_180440.1 0.95 1.80e-08 3.38e-06
Smp_095410.1 Smp_180440.1 0.90 2.66e-06 1.00e-04
Smp_123550.1 Smp_180440.1 0.91 1.54e-06 7.25e-05
Smp_137000.2 Smp_180440.1 0.97 1.62e-09 6.95e-07
Smp_145400.1 Smp_180440.1 0.91 2.26e-06 9.50e-05
Smp_151120.1 Smp_180440.1 0.91 1.52e-06 7.16e-05
Smp_155570.1 Smp_180440.1 0.90 2.90e-06 1.00e-04
Smp_156930.1 Smp_180440.1 0.98 1.39e-10 1.43e-07
Smp_159070.2 Smp_180440.1 0.94 9.15e-08 1.01e-05
Smp_172480.1 Smp_180440.1 0.93 4.20e-07 2.91e-05
Smp_180440.1 Smp_172960.1 0.96 9.86e-09 2.26e-06
Smp_192780.1 Smp_180440.1 0.93 3.62e-07 2.62e-05
Smp_194860.1 Smp_180440.1 0.98 7.93e-11 1.00e-07
Smp_201910.1 Smp_180440.1 0.93 4.41e-07 3.01e-05
Smp_203090.1 Smp_180440.1 0.96 5.46e-09 1.53e-06
Smp_205270.1 Smp_180440.1 0.91 1.28e-06 6.38e-05
Smp_212510.1 Smp_180440.1 -0.90 2.78e-06 1.00e-04